############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf iChip.buildbin-libdir && mkdir iChip.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh iChip_1.52.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R iChip.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=iChip.buildbin-libdir iChip_1.52.0.tar.gz' >>>>>>> * installing *source* package ‘iChip’ ... ** using staged installation rm: *~: No such file or directory rm: src/*.o: No such file or directory rm: src/*.so: No such file or directory ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c iChip.c -o iChip.o iChip.c:23:51: warning: variable 'nrowm1' set but not used [-Wunused-but-set-variable] int sampleSize,LB,RB,i,j,r,nnoise,nsignal,state,nrowm1,wtsum; ^ 1 warning generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o iChip.so iChip.o registerDynamicSymbol.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.16-bioc/meat/iChip.buildbin-libdir/00LOCK-iChip/00new/iChip/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iChip) >>>>>>> >>>>>>> FIXING LINKS FOR iChip.buildbin-libdir/iChip/libs/iChip.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "iChip.buildbin-libdir/iChip/libs/iChip.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "iChip.buildbin-libdir/iChip/libs/iChip.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "iChip.buildbin-libdir/iChip/libs/iChip.so"