############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Statial.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings Statial_1.0.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/Statial.Rcheck' * using R version 4.2.3 (2023-03-15 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'Statial/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Statial' version '1.0.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Statial' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Konditional: no visible binding for global variable 'test' Konditional: no visible binding for global variable 'parent_name' ggplotRs: no visible binding for global variable 'r' ggplotRs: no visible binding for global variable 'konditionalSd' ggplotRs: no visible binding for global variable 'originalSd' ggplotRs: no visible binding for global variable 'value' ggplotRs: no visible binding for global variable 'name' ggplotRs: no visible binding for global variable 'lower' ggplotRs: no visible binding for global variable 'upper' inhomL: no visible binding for global variable 'j' inhomL: no visible binding for global variable 'value' inhomL: no visible binding for global variable 'i' inhomL: no visible binding for global variable 'd' inhomL: no visible binding for global variable 'cellTypeI' inhomL: no visible binding for global variable 'cellTypeJ' inhomL: no visible global function definition for '.' inhomL: no visible binding for global variable 'wt' inhomLParent: no visible binding for global variable 'd' inhomLParent: no visible binding for global variable 'i' parentCombinations: no visible binding for global variable 'from' parentCombinations: no visible binding for global variable 'to' relabel: no visible binding for global variable 'cellType' relabelKonditional: no visible binding for global variable 'imageID' rsCurve: no visible binding for global variable 'type' rsCurve: no visible binding for global variable 'r' rsCurve: no visible binding for global variable 'original' rsCurve: no visible binding for global variable 'konditional' Undefined global functions or variables: . cellType cellTypeI cellTypeJ d from i imageID j konditional konditionalSd lower name original originalSd parent_name r test to type upper value wt * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed relabelKonditional 2.37 0.11 31.31 ggplotRs 1.77 0.03 54.49 Konditional 1.53 0.07 27.42 rsCurve 1.30 0.04 53.88 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.16-bioc/meat/Statial.Rcheck/00check.log' for details.