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### Running command:
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###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:Statial.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings Statial_1.0.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/Statial.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘Statial/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Statial’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Statial’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Konditional: no visible binding for global variable ‘test’
Konditional: no visible binding for global variable ‘parent_name’
ggplotRs: no visible binding for global variable ‘r’
ggplotRs: no visible binding for global variable ‘konditionalSd’
ggplotRs: no visible binding for global variable ‘originalSd’
ggplotRs: no visible binding for global variable ‘value’
ggplotRs: no visible binding for global variable ‘name’
ggplotRs: no visible binding for global variable ‘lower’
ggplotRs: no visible binding for global variable ‘upper’
inhomL: no visible binding for global variable ‘j’
inhomL: no visible binding for global variable ‘value’
inhomL: no visible binding for global variable ‘i’
inhomL: no visible binding for global variable ‘d’
inhomL: no visible binding for global variable ‘cellTypeI’
inhomL: no visible binding for global variable ‘cellTypeJ’
inhomL: no visible global function definition for ‘.’
inhomL: no visible binding for global variable ‘wt’
inhomLParent: no visible binding for global variable ‘d’
inhomLParent: no visible binding for global variable ‘i’
parentCombinations: no visible binding for global variable ‘from’
parentCombinations: no visible binding for global variable ‘to’
relabel: no visible binding for global variable ‘cellType’
relabelKonditional: no visible binding for global variable ‘imageID’
rsCurve: no visible binding for global variable ‘type’
rsCurve: no visible binding for global variable ‘r’
rsCurve: no visible binding for global variable ‘original’
rsCurve: no visible binding for global variable ‘konditional’
Undefined global functions or variables:
  . cellType cellTypeI cellTypeJ d from i imageID j konditional
  konditionalSd lower name original originalSd parent_name r test to
  type upper value wt
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                     user system elapsed
ggplotRs           61.985  2.043  44.186
relabelKonditional 46.811  3.046  18.805
rsCurve            20.310  1.218  44.391
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘Statial.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-bioc/meat/Statial.Rcheck/00check.log’
for details.