############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL BioQC ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'BioQC' ... ** using staged installation ** libs gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.16-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c gini.c -o gini.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.16-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o g++ -std=gnu++14 -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.16-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c read_gmt.cpp -o read_gmt.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.16-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stat_rank.c -o stat_rank.o gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG `F:/biocbuild/bbs-3.16-bioc/R/bin/Rscript -e 'Rcpp:::CxxFlags()'` -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include' -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wmw_test.c -o wmw_test.o wmw_test.c: In function 'wmw_test_list': wmw_test.c:118: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 118 | #pragma omp parallel for | wmw_test.c: In function 'wmw_test': wmw_test.c:168: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 168 | #pragma omp parallel for | wmw_test.c: In function 'signed_wmw_test_list': wmw_test.c:201: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 201 | #pragma omp parallel for | wmw_test.c: In function 'signed_wmw_test': wmw_test.c:270: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 270 | #pragma omp parallel for | g++ -std=gnu++14 -shared -s -static-libgcc -o BioQC.dll tmp.def gini.o init.o read_gmt.o stat_rank.o wmw_test.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.16-bioc/R/library/00LOCK-BioQC/00new/BioQC/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BioQC)