############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL pepStat ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'pepStat' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat' No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values' when loading 'pepStat' ** help *** installing help indices converting help for package 'pepStat' finding HTML links ... done baselineCorrect.pSet html baseline_correct html create_db html finding level-2 HTML links ... done makeCalls html makePeptideSet html normalizeArray html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-pepStat/00new/pepStat/help/normalizeArray.html peptideSet-methods html peptideSet html plotArray html restab html shinyPepStat html slidingMean html summarizePeptides html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat' No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values' when loading 'pepStat' ** testing if installed package can be loaded from final location No methods found in package 'GenomicRanges' for request: 'mcols<-' when loading 'pepStat' No methods found in package 'GenomicRanges' for request: 'mcols' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values<-' when loading 'pepStat' No methods found in package 'IRanges' for request: 'values' when loading 'pepStat' ** testing if installed package keeps a record of temporary installation path * DONE (pepStat) Making 'packages.html' ... done