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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL orthogene
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'orthogene' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'orthogene'
    finding HTML links ... done
    add_synonyms                            html  
    aggregate_mapped_genes                  html  
    aggregate_rows                          html  
    all_genes                               html  
    all_genes_babelgene                     html  
    check_gene_df_type                      html  
    convert_orthologs                       html  
    create_background                       html  
    exp_mouse                               html  
    exp_mouse_enst                          html  
    gather_images                           html  
    get_orgdb_genomeinfodbdata              html  
    ggtree_plot                             html  
    gprofiler_orgs                          html  
    infer_species                           html  
    infer_species_plot                      html  
    invert_dictionary                       html  
    map_genes                               html  
    map_orthologs                           html  
    map_orthologs_babelgene                 html  
    map_orthologs_gprofiler                 html  
    map_orthologs_homologene                html  
    map_species                             html  
    message_parallel                        html  
    orthogene-package                       html  
    plot_benchmark_bar                      html  
    plot_benchmark_scatter                  html  
    plot_orthotree                          html  
    prepare_tree                            html  
    report_orthologs                        html  
    run_benchmark                           html  
    taxa_id_dict                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (orthogene)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'FastqCleaner' is missing or broken
 done