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###
### Running command:
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###   rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=monocle.buildbin-libdir monocle_2.23.2.tar.gz
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* installing *source* package 'monocle' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c clustering.cpp -o clustering.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/monocle.buildbin-libdir/00LOCK-monocle/00new/monocle/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'monocle'
    finding HTML links ... done
    BEAM                                    html  
    CellDataSet-methods                     html  
    CellDataSet                             html  
    CellType                                html  
    CellTypeHierarchy                       html  
    addCellType                             html  
    branchTest                              html  
    buildBranchCellDataSet                  html  
    calABCs                                 html  
    calILRs                                 html  
    calibrate_per_cell_total_proposal       html  
    cellPairwiseDistances-set               html  
    cellPairwiseDistances                   html  
    clusterCells                            html  
    clusterGenes                            html  
    compareModels                           html  
    detectBifurcationPoint                  html  
    detectGenes                             html  
    diff_test_helper                        html  
    differentialGeneTest                    html  
    dispersionTable                         html  
    estimateDispersionsForCellDataSet       html  
    estimateSizeFactorsForMatrix            html  
    estimate_t                              html  
    exportCDS                               html  
    extract_good_branched_ordering          html  
    fitModel                                html  
    fit_model_helper                        html  
    genSmoothCurveResiduals                 html  
    genSmoothCurves                         html  
    get_classic_muscle_markers              html  
    importCDS                               html  
    load_HSMM                               html  
    load_HSMM_markers                       html  
    load_lung                               html  
    markerDiffTable                         html  
    mcesApply                               html  
    minSpanningTree-set                     html  
    minSpanningTree                         html  
    newCellDataSet                          html  
    newCellTypeHierarchy                    html  
    orderCells                              html  
    order_p_node                            html  
    package-deprecated                      html  
    plot_cell_clusters                      html  
    plot_cell_trajectory                    html  
    plot_clusters                           html  
    plot_coexpression_matrix                html  
    plot_complex_cell_trajectory            html  
    plot_genes_branched_heatmap             html  
    plot_genes_branched_pseudotime          html  
    plot_genes_in_pseudotime                html  
    plot_genes_jitter                       html  
    plot_genes_positive_cells               html  
    plot_genes_violin                       html  
    plot_multiple_branches_heatmap          html  
    plot_multiple_branches_pseudotime       html  
    plot_ordering_genes                     html  
    plot_pc_variance_explained              html  
    plot_pseudotime_heatmap                 html  
    plot_rho_delta                          html  
    pq_helper                               html  
    reduceDimension                         html  
    reducedDimA-set                         html  
    reducedDimA                             html  
    reducedDimK-set                         html  
    reducedDimK                             html  
    reducedDimS-set                         html  
    reducedDimS                             html  
    reducedDimW-set                         html  
    reducedDimW                             html  
    relative2abs                            html  
    residualMatrix                          html  
    responseMatrix                          html  
    selectTopMarkers                        html  
    setOrderingFilter                       html  
    spike_df                                html  
    vstExprs                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'monocle' as monocle_2.23.2.zip
* DONE (monocle)