############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL dcanr ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'dcanr' ... ** using staged installation It is recommended to use 'given' instead of 'middle'. It is recommended to use 'given' instead of 'middle'. ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for 'dcScore' with signature '"Matrix","ANY","ANY"': no definition for class "Matrix" in method for 'dcScore' with signature '"ExpressionSet","ANY","ANY"': no definition for class "ExpressionSet" in method for 'dcScore' with signature '"SummarizedExperiment","ANY","ANY"': no definition for class "SummarizedExperiment" in method for 'dcScore' with signature '"DGEList","ANY","ANY"': no definition for class "DGEList" ** help *** installing help indices converting help for package 'dcanr' finding HTML links ... done cor.pairs html dcAdjust html dcEvaluate html dcMethods html dcNetwork html dcPipeline html dcScore html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-dcanr/00new/dcanr/help/dcScore+2CMatrix-method.html dcTest html dcanr-package html getSimData html mi.ap html perfMethods html performanceMeasure html plotSimNetwork html sim102 html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dcanr) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'flowMap' is missing or broken done