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###
### Running command:
###
###   rm -rf compcodeR.buildbin-libdir && mkdir compcodeR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=compcodeR.buildbin-libdir compcodeR_1.31.1.tar.gz
###
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* installing *source* package 'compcodeR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'compcodeR'
    finding HTML links ... done
    DESeq2.createRmd                        html  
    DESeq2.length.createRmd                 html  
    DSS.createRmd                           html  
    EBSeq.createRmd                         html  
    NBPSeq.createRmd                        html  
    NB_to_PLN                               html  
    NOISeq.prenorm.createRmd                html  
    TCC.createRmd                           html  
    add_replicates                          html  
    baySeq.createRmd                        html  
    checkDataObject                         html  
    checkParamMatrix                        html  
    checkParamVector                        html  
    checkSpecies                            html  
    checkTableConsistency                   html  
    check_compData                          html  
    check_compData_results                  html  
    check_phyloCompData                     html  
    compData-class                          html  
    compData                                html  
    compcodeR-package                       html  
    computeFactorLengths                    html  
    convertListTocompData                   html  
    convertListTophyloCompData              html  
    convertcompDataToList                   html  
    convertphyloCompDataToList              html  
    edgeR.GLM.createRmd                     html  
    edgeR.exact.createRmd                   html  
    extract_results_phylolm                 html  
    generateCodeHTMLs                       html  
    generateLengths                         html  
    generateLengthsPhylo                    html  
    generateSyntheticData                   html  
    getNegativeBinomialDispersion           html  
    getNegativeBinomialMean                 html  
    getNegativeBinomialParameters           html  
    getTree                                 html  
    get_model_factor                        html  
    get_poisson_log_normal_parameters       html  
    lengthNorm.limma.createRmd              html  
    listcreateRmd                           html  
    logcpm.limma.createRmd                  html  
    nEffNaive                               html  
    nEffRatio                               html  
    phyloCompData-class                     html  
    phyloCompData                           html  
    phyloCompDataFromCompData               html  
    phylolm.createRmd                       html  
    phylolm_analysis                        html  
    runComparison                           html  
    runComparisonGUI                        html  
    runDiffExp                              html  
    scale_variance_process                  html  
    show-compData-method                    html  
    show-phyloCompData-method               html  
    show_compData                           html  
    simulateData                            html  
    simulateDataPhylo                       html  
    simulatePhyloPoissonLogNormal           html  
    sqrtcpm.limma.createRmd                 html  
    summarizeSyntheticDataSet               html  
    ttest.createRmd                         html  
    voom.limma.createRmd                    html  
    voom.ttest.createRmd                    html  
    writeNormalization                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'compcodeR' as compcodeR_1.31.1.zip
* DONE (compcodeR)