############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cellbaseR ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'cellbaseR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cellbaseR' finding HTML links ... done AnnotateVcf-CellBaseR-method html CellBaseParam-class html CellBaseParam html CellBaseR-class html CellBaseR html cellbaseR-package html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-cellbaseR/00new/cellbaseR/help/cellbaseR.html createGeneModel html getCaddScores html getCellBase-CellBaseR-method html getCellBaseResourceHelp html getChromosomeInfo-CellBaseR-method html getClinical-CellBaseR-method html getClinicalByGene html getClinicalByRegion html getConservationByRegion html getGene-CellBaseR-method html getGeneInfo html getMeta-CellBaseR-method html getProtein-CellBaseR-method html getProteinInfo html getRegion-CellBaseR-method html getRegulatoryByRegion html getSnp-CellBaseR-method html getSnpByGene html getTf-CellBaseR-method html getTfbsByRegion html getTranscript-CellBaseR-method html getTranscriptByGene html getVariant-CellBaseR-method html getVariantAnnotation html getXref-CellBaseR-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cellbaseR) Making 'packages.html' ... done