############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=biomformat.buildbin-libdir biomformat_1.23.0.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'biomformat' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'nrow' from package 'base' in package 'biomformat' Creating a generic function for 'ncol' from package 'base' in package 'biomformat' Creating a generic function for 'rownames' from package 'base' in package 'biomformat' Creating a generic function for 'colnames' from package 'base' in package 'biomformat' ** help *** installing help indices converting help for package 'biomformat' finding HTML links ... done biom-class html biom-methods html finding level-2 HTML links ... done biom-package html biom_data-methods html Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpUVKYNF/R.INSTALL32206d4c219d/biomformat/man/biom_data-methods.Rd:46: missing link 'plyr-package' biom_shape-methods html colnames-methods html header-methods html make_biom html matrix_element_type-methods html ncol-methods html nrow-methods html observation_metadata-methods html Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpUVKYNF/R.INSTALL32206d4c219d/biomformat/man/observation_metadata-methods.Rd:30: missing link 'plyr-package' read_biom html read_hdf5_biom html rownames-methods html sample_metadata-methods html Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpUVKYNF/R.INSTALL32206d4c219d/biomformat/man/sample_metadata-methods.Rd:30: missing link 'plyr-package' show-methods html write_biom html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'biomformat' as biomformat_1.23.0.zip * DONE (biomformat)