############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL XINA ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'XINA' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'XINA' finding HTML links ... done add_legend html alluvial_enriched html alluvial_enrichment_tests html calculate_centrality_scores html default_size html draw_alluvial_plot html example_clusters html extract_data_column html find_similar_clusters html generate_count_table html generate_superset html get_color_for_nodes html get_colors html get_comigrations_by_name html get_condition_biased_comigrations html get_layout html get_mTOR_proteins html get_random_data html get_stats html get_theme_blank html get_unknown_ppi_nodes html gn html gn_desc html hprd_ppi html length2 html load_previous_results html make_random_xina_data html mutate_colors html organize_clusters html plot_NA html plot_clusters html plot_clusters_all html plot_condition_compositions html plot_enrichment_results html rank_centrality html string_example html xina_analysis html xina_clustering html xina_enrichment html xina_plot_all html xina_plot_bycluster html xina_plot_single html xina_result_example html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (XINA) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'nethet' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'unifiedWMWqPCR' is missing or broken done