############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SynExtend.buildbin-libdir && mkdir SynExtend.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=SynExtend.buildbin-libdir SynExtend_1.7.11.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'SynExtend' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SynExtend' finding HTML links ... done BlockExpansion html finding level-2 HTML links ... done BlockReconciliation html DisjointSet html EstimateRearrangementScenarios html ExtractBy html FindSets html Generic html LinkedPairs-class html Nitrosocosmicus_GeneCalls html Nitrosocosmicus_LinkedFeatures html Nitrosocosmicus_Pairs01 html Nitrosocosmicus_Pairs02 html Nitrosocosmicus_Pairs03 html Nitrosocosmicus_Sets html Nitrosocosmicus_Synteny html NucleotideOverlap html PairSummaries html SequenceSimilarity html SubSetPairs html gffToDataFrame html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'SynExtend' as SynExtend_1.7.11.zip * DONE (SynExtend)