############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SpatialDecon ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'SpatialDecon' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SpatialDecon' finding HTML links ... done SpatialDecon-package html TIL_barplot html cellcols html collapseCellTypes html create_profile_matrix html derive_GeoMx_background html download_profile_matrix html florets html mean.resid.sd html mergeTumorIntoX html mini_geomx_dataset html mini_singleCell_dataset html nsclc html reverseDecon html runCollapseCellTypes-NanoStringGeoMxSet-method html runCollapseCellTypes html runErrorModel html runMergeTumorIntoX-NanoStringGeoMxSet-method html runMergeTumorIntoX html runReverseDecon-NanoStringGeoMxSet-method html runReverseDecon html runspatialdecon-NanoStringGeoMxSet-method html runspatialdecon-Seurat-method html runspatialdecon html safeTME html safeTME.matches html spatialdecon html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpatialDecon) Making 'packages.html' ... done