############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf RProtoBufLib.buildbin-libdir && mkdir RProtoBufLib.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=RProtoBufLib.buildbin-libdir RProtoBufLib_2.7.1.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'RProtoBufLib' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs "D:/biocbuild/bbs-3.15-bioc/R/bin/x64/Rscript.exe" "../tools/downloadlibs.R" 3.13.0 "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.13.0/include -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c GatingSet_pb_lib/GatingSet.pb.cc -o GatingSet_pb_lib/GatingSet.pb.o mkdir -p "D:/biocbuild/bbs-3.15-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/include" cp -r ../windows/protobuf-3.13.0/include/google "D:/biocbuild/bbs-3.15-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/include" mkdir -p "D:/biocbuild/bbs-3.15-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/x64" cp ../windows/protobuf-3.13.0/lib/x64/libprotobuf.a "D:/biocbuild/bbs-3.15-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/x64/libprotobuf.a" cp GatingSet_pb_lib/GatingSet.pb.o "D:/biocbuild/bbs-3.15-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/lib/x64/GatingSet.pb.o" "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I../inst/include/ -I../windows/protobuf-3.13.0/include -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c dummy.cpp -o dummy.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o RProtoBufLib.dll tmp.def dummy.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/meat/RProtoBufLib.buildbin-libdir/00LOCK-RProtoBufLib/00new/RProtoBufLib/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'RProtoBufLib' finding HTML links ... done LdFlags html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'RProtoBufLib' as RProtoBufLib_2.7.1.zip * DONE (RProtoBufLib)