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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Pviz.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings Pviz_1.29.0.tar.gz
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/Pviz.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Pviz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Pviz' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Pviz' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/Pviz/man/ATrack.Rd:34: missing link 'GdObject'
  Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/Pviz/man/DTrack.Rd:30: missing link 'GdObject'
  Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/Pviz/man/ProbeTrack.Rd:68: missing link 'GdObject'
See 'D:/biocbuild/bbs-3.15-bioc/meat/Pviz.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.makeParMapping: no visible global function definition for
  'assignInNamespace'
plot_clade: no visible global function definition for 'tail'
drawGD,ProbeTrack: no visible global function definition for
  'pushViewport'
drawGD,ProbeTrack: no visible global function definition for 'viewport'
drawGD,ProbeTrack: no visible global function definition for
  'popViewport'
drawGD,ProbeTrack: no visible global function definition for 'unit'
drawGD,ProbeTrack: no visible global function definition for 'gpar'
drawGD,ProbeTrack: no visible global function definition for
  'convertWidth'
drawGD,ProbeTrack: no visible global function definition for
  'stringWidth'
drawGD,ProbeTrack: no visible global function definition for
  'stringHeight'
drawGD,ProbeTrack: no visible global function definition for
  'grid.text'
drawGD,ProbeTrack: no visible global function definition for
  'grid.rect'
drawGD,ProbeTrack: no visible global function definition for
  'dataViewport'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
  for 'grid.rect'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
  for 'gpar'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
  for 'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
  'pushViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
  'dataViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
  'convertHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
  'stringHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
  'popViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
  '.getGapPos'
drawGD,ProteinAxisTrack: no visible global function definition for
  'gaps'
drawGD,ProteinAxisTrack: no visible global function definition for
  'viewport'
drawGD,ProteinAxisTrack: no visible global function definition for
  'grid.segments'
drawGD,ProteinAxisTrack: no visible global function definition for
  'gpar'
drawGD,ProteinAxisTrack: no visible global function definition for
  'coord2ext'
drawGD,ProteinAxisTrack: no visible global function definition for
  'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
  'convertWidth'
drawGD,ProteinAxisTrack: no visible global function definition for
  'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'pushViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'dataViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'gpar'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'popViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'convertUnit'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'grid.lines'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'unit'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'grid.text'
drawGD,ProteinSequenceTrack: no visible global function definition for
  'grid.rect'
Undefined global functions or variables:
  .getGapPos assignInNamespace convertHeight convertUnit convertWidth
  coord2ext dataViewport gaps gpar grid.lines grid.rect grid.segments
  grid.text popViewport pushViewport stringHeight stringWidth tail unit
  viewport
Consider adding
  importFrom("utils", "assignInNamespace", "tail")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'ATrack.Rd':
  'GdObject'

Missing link or links in documentation object 'DTrack.Rd':
  'GdObject'

Missing link or links in documentation object 'ProbeTrack.Rd':
  'GdObject'

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  'D:/biocbuild/bbs-3.15-bioc/meat/Pviz.Rcheck/00check.log'
for details.