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###
### Running command:
###
###   rm -rf PWMEnrich.buildbin-libdir && mkdir PWMEnrich.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=PWMEnrich.buildbin-libdir PWMEnrich_4.31.0.tar.gz
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* installing *source* package 'PWMEnrich' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'PWMEnrich'
    finding HTML links ... done
    DNAStringSetToList                      html  
    MotifEnrichmentReport-class             html  
    MotifEnrichmentResults-class            html  
    PFMtoPWM                                html  
    PWM-class                               html  
    PWMCutoffBackground-class               html  
    PWMEmpiricalBackground-class            html  
    PWMEnrich-package                       html  
    PWMGEVBackground-class                  html  
    PWMLognBackground-class                 html  
    PWMUnscaled                             html  
    affinitySequenceSet                     html  
    as.data.frame-MotifEnrichmentReport-method
                                            html  
    cloverPvalue1seq                        html  
    cloverScore                             html  
    colMedians                              html  
    colSds                                  html  
    concatenateSequences                    html  
    cutoffZscore                            html  
    cutoffZscoreSequenceSet                 html  
    divideRows                              html  
    dot-inputPFMfromMatrixOrPWM             html  
    dot-inputParamMotifs                    html  
    dot-inputParamSequences                 html  
    dot-normalize.bg.seq                    html  
    dot-normargPfm                          html  
    dot-normargPriorParams                  html  
    empiricalPvalue                         html  
    empiricalPvalueSequenceSet              html  
    getBackgroundFrequencies                html  
    getPromoters                            html  
    gevPerSequence                          html  
    groupReport-MotifEnrichmentResults-method
                                            html  
    keepFinite                              html  
    logNormPval                             html  
    logNormPvalSequenceSet                  html  
    makeBackground                          html  
    makePWMCutoffBackground                 html  
    makePWMEmpiricalBackground              html  
    makePWMGEVBackground                    html  
    makePWMLognBackground                   html  
    makePWMPvalCutoffBackground             html  
    makePWMPvalCutoffBackgroundFromSeq      html  
    makePriors                              html  
    makeStartEndPos                         html  
    matrixShuffleZscorePerSequence          html  
    maxAligned                              html  
    motifDiffEnrichment                     html  
    motifEcdf                               html  
    motifEnrichment                         html  
    motifIC                                 html  
    motifPrAUC                              html  
    motifRankingForGroup-MotifEnrichmentResults-method
                                            html  
    motifRankingForSequence-MotifEnrichmentResults-method
                                            html  
    motifRecoveryAUC                        html  
    motifScores                             html  
    motifScoresBigMemory                    html  
    motifSimilarity                         html  
    operators-MotifEnrichmentReport         html  
    operators-MotifEnrichmentResults        html  
    operators-PWM                           html  
    operators-PWMCutoffBackground           html  
    operators-PWMEmpiricalBackground        html  
    operators-PWMGEVBackground              html  
    operators-PWMLognBackground             html  
    plot-MotifEnrichmentReport-missing-method
                                            html  
    plot-PWM-missing-method                 html  
    plotMotifScores                         html  
    plotMultipleMotifs                      html  
    plotPFM                                 html  
    plotTopMotifsGroup-MotifEnrichmentResults-method
                                            html  
    plotTopMotifsSequence-MotifEnrichmentResults-method
                                            html  
    rankingProcessAndReturn                 html  
    readJASPAR                              html  
    readMotifs                              html  
    readTRANSFAC                            html  
    registerCoresPWMEnrich                  html  
    reverseComplement-PWM-method            html  
    scanWithPWM                             html  
    seqLogoGrid                             html  
    sequenceReport-MotifEnrichmentResults-method
                                            html  
    show-MotifEnrichmentReport-method       html  
    show-MotifEnrichmentResults-method      html  
    show-PWM-method                         html  
    show-PWMCutoffBackground-method         html  
    show-PWMEmpiricalBackground-method      html  
    show-PWMGEVBackground-method            html  
    show-PWMLognBackground-method           html  
    subsetting-PWMCutoffBackground          html  
    subsetting-PWMEmpiricalBackground       html  
    subsetting-PWMGEVBackground             html  
    subsetting-PWMLognBackground            html  
    toPWM                                   html  
    tryAllMotifAlignments                   html  
    useBigMemoryPWMEnrich                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'PWMEnrich' as PWMEnrich_4.31.0.zip
* DONE (PWMEnrich)