############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL OrganismDbi ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'OrganismDbi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'OrganismDbi' finding HTML links ... done OrganismDb html finding level-2 HTML links ... done Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/OrganismDbi/man/OrganismDb.Rd:191: missing link 'GenomeInfoDb' coordinate-mapping-method html makeOrganismDbFromBiomart html makeOrganismDbFromTxDb html makeOrganismDbFromUCSC html makeOrganismPackage html rangeBasedAccessors html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OrganismDbi) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'GOTHiC' is missing or broken done