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###
### Running command:
###
###   rm -rf GenomicSuperSignature.buildbin-libdir && mkdir GenomicSuperSignature.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GenomicSuperSignature.buildbin-libdir GenomicSuperSignature_1.3.6.tar.gz
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* installing *source* package 'GenomicSuperSignature' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicSuperSignature'
    finding HTML links ... done
    GenomicSignatures-class                 html  
    GenomicSignatures-methods               html  
    PCAGenomicSignatures-class              html  
    PCAGenomicSignatures-methods            html  
    PCAGenomicSignatures                    html  
    PCinRAV                                 html  
    annotatePC                              html  
    annotateRAV                             html  
    availableRAVmodel                       html  
    buildAvgLoading                         html  
    calculateScore                          html  
    dot-RAVName                             html  
    dot-calculateSilhouetteWidth            html  
    dot-loadingCor                          html  
    drawWordcloud                           html  
    droplist                                html  
    extractPC                               html  
    filterList                              html  
    findKeywordInRAV                        html  
    findSignature                           html  
    findStudiesInCluster                    html  
    getModel                                html  
    finding level-2 HTML links ... done

Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpKUds4G/R.INSTALL2350411343e99/GenomicSuperSignature/man/getModel.Rd:19: missing link 'availableRAVmodel()'
    getRAVInfo                              html  
    getStudyInfo                            html  
    heatmapTable                            html  
    makeGeneList                            html  
    meshTable                               html  
    miniAllZ                                html  
    miniRAVmodel                            html  
    miniTCGA                                html  
    msigdb_gsea                             html  
    plotAnnotatedPCA                        html  
    plotValidate                            html  
    res_hcut                                html  
    rmNaInf                                 html  
    rowNorm                                 html  
    run_gsea                                html  
    sampleScoreHeatmap                      html  
    subsetEnrichedPathways                  html  
    subsetGSEA                              html  
    validate                                html  
    validatedSignatures                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GenomicSuperSignature' as GenomicSuperSignature_1.3.6.zip
* DONE (GenomicSuperSignature)