##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/scRepertoire_1.4.0.tar.gz && rm -rf scRepertoire.buildbin-libdir && mkdir scRepertoire.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scRepertoire.buildbin-libdir scRepertoire_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL scRepertoire_1.4.0.zip && rm scRepertoire_1.4.0.tar.gz scRepertoire_1.4.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 28 3765k   28 1090k    0     0  1216k      0  0:00:03 --:--:--  0:00:03 1216k
 85 3765k   85 3215k    0     0  1699k      0  0:00:02  0:00:01  0:00:01 1699k
100 3765k  100 3765k    0     0  1811k      0  0:00:02  0:00:02 --:--:-- 1812k

install for i386

* installing *source* package 'scRepertoire' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scRepertoire'
    finding HTML links ... done
    Startrac                                html  
    Startrac.run                            html  
    StartracDiversity                       html  
    StartracOut                             html  
    abundanceContig                         html  
    addVariable                             html  
    alluvialClonotypes                      html  
    calIndex                                html  
    clonalDiversity                         html  
    clonalHomeostasis                       html  
    clonalOverlap                           html  
    clonalOverlay                           html  
    clonalProportion                        html  
    clonesizeDistribution                   html  
    clusterTCR                              html  
    combineBCR                              html  
    combineExpression                       html  
    combineTCR                              html  
    compareClonotypes                       html  
    contig_list                             html  
    expression2List                         html  
    getCirclize                             html  
    getSig                                  html  
    highlightClonotypes                     html  
    initialize-StartracOut-method           html  
    initialize-methods                      html  
    lengthContig                            html  
    loginfo                                 html  
    mcol.entropy                            html  
    mrow.entropy                            html  
    occupiedscRepertoire                    html  
    pIndex                                  html  
    quantContig                             html  
    screp_example                           html  
    show-StartracOut-method                 html  
    show                                    html  
    stripBarcode                            html  
    subsetContig                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scRepertoire' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scRepertoire' as scRepertoire_1.4.0.zip
* DONE (scRepertoire)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'scRepertoire' successfully unpacked and MD5 sums checked