############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/qsea_1.20.0.tar.gz && rm -rf qsea.buildbin-libdir && mkdir qsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qsea.buildbin-libdir qsea_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL qsea_1.20.0.zip && rm qsea_1.20.0.tar.gz qsea_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 286k 100 286k 0 0 638k 0 --:--:-- --:--:-- --:--:-- 640k install for i386 * installing *source* package 'qsea' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lm.c -o lm.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/qsea.buildbin-libdir/00LOCK-qsea/00new/qsea/libs/i386 ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'qsea' finding HTML links ... done addCNV html addContrast html addCoverage html addEnrichmentParameters html addLibraryFactors html addNewSamples html addOffset html addPatternDensity html addSeqPref html createQseaSet html example html fitNBglm html getPCA html isSignificant html makeTable html normMethod html plotCNV html plotCoverage html plotEnrichmentProfile html plotPCA html qsea-package html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/qsea.buildbin-libdir/00LOCK-qsea/00new/qsea/help/QSEA.html qseaGLM-class html qseaPCA-class html qseaSet-class html regionStats html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'qsea' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lm.c -o lm.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/qsea.buildbin-libdir/qsea/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'qsea' as qsea_1.20.0.zip * DONE (qsea) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'qsea' successfully unpacked and MD5 sums checked