############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/nethet_1.26.0.tar.gz && rm -rf nethet.buildbin-libdir && mkdir nethet.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=nethet.buildbin-libdir nethet_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL nethet_1.26.0.zip && rm nethet_1.26.0.tar.gz nethet_1.26.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 88701 100 88701 0 0 383k 0 --:--:-- --:--:-- --:--:-- 384k install for i386 * installing *source* package 'nethet' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c betamat_diffnet.c -o betamat_diffnet.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o nethet.dll tmp.def betamat_diffnet.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/nethet.buildbin-libdir/00LOCK-nethet/00new/nethet/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet' Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet' ** help *** installing help indices converting help for package 'nethet' finding HTML links ... done EXPStep.mix html MStepGlasso html NetHet-package html agg.pval html agg.score.iriz.scale html agg.score.iriz.shift html aggpval html aic.glasso html beta.mat html beta.mat.diffregr html bic.glasso html buildDotPlotDataFrame html bwprun_mixglasso html cv.fold html cv.glasso html diffnet_multisplit html diffnet_pval html diffnet_singlesplit html diffregr_multisplit html diffregr_pval html diffregr_singlesplit html dot_plot html error.bars html est2.my.ev2 html est2.my.ev2.diffregr html est2.my.ev3 html est2.my.ev3.diffregr html est2.ww.mat.diffregr html est2.ww.mat2 html est2.ww.mat2.diffregr html export_network html func.uinit html generate_2networks html generate_inv_cov html getinvcov html ggmgsa_multisplit html ggmgsa_singlesplit html glasso.invcor html glasso.invcov html glasso.parcor html gsea.highdimT2 html gsea.iriz html gsea.iriz.scale html gsea.iriz.shift html gsea.t2cov html het_cv_glasso html hugepath html inf.mat html invcov2parcor html invcov2parcor_array html lambda.max html lambdagrid_lin html lambdagrid_mult html loglik_mix html logratio html logratio.diffregr html make_grid html mcov html mixglasso html mixglasso_init html mixglasso_ncomp_fixed html mle.ggm html my.ev2.diffregr html my.p.adjust html my.ttest html my.ttest2 html mytrunc.method html perm.diffregr_pval html perm.diffregr_teststat html plot.diffnet html plot.diffregr html plot.ggmgsa html plot.nethetclustering html plotCV html plot_2networks html print.nethetsummary html q.matrix.diffregr html q.matrix.diffregr3 html q.matrix.diffregr4 html q.matrix3 html q.matrix4 html scatter_plot html screen_aic.glasso html screen_bic.glasso html screen_cv.glasso html screen_cv1se.lasso html screen_cvfix.lasso html screen_cvmin.lasso html screen_cvsqrt.lasso html screen_cvtrunc.lasso html screen_full html screen_shrink html shapiro_screen html sim_mix html sim_mix_networks html sparse_conc html summary.diffnet html summary.diffregr html summary.ggmgsa html summary.nethetclustering html sumoffdiag html symmkldist html t2cov.lr html t2diagcov.lr html test.sd html test.t2 html tr html twosample_single_regr html w.kldist html ww.mat html ww.mat.diffregr html ww.mat2 html ww.mat2.diffregr html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet' Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet' ** testing if installed package can be loaded from final location Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet' Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'nethet' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c betamat_diffnet.c -o betamat_diffnet.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o nethet.dll tmp.def betamat_diffnet.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/nethet.buildbin-libdir/nethet/libs/x64 ** testing if installed package can be loaded Warning: replacing previous import 'mclust::dmvnorm' by 'mvtnorm::dmvnorm' when loading 'nethet' Warning: replacing previous import 'multtest::update' by 'stats::update' when loading 'nethet' * MD5 sums packaged installation of 'nethet' as nethet_1.26.0.zip * DONE (nethet) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'nethet' successfully unpacked and MD5 sums checked