############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/msPurity_1.20.0.tar.gz && rm -rf msPurity.buildbin-libdir && mkdir msPurity.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=msPurity.buildbin-libdir msPurity_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL msPurity_1.20.0.zip && rm msPurity_1.20.0.tar.gz msPurity_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 11.2M 0 51086 0 0 321k 0 0:00:35 --:--:-- 0:00:35 321k 14 11.2M 14 1703k 0 0 1474k 0 0:00:07 0:00:01 0:00:06 1474k 37 11.2M 37 4283k 0 0 1990k 0 0:00:05 0:00:02 0:00:03 1990k 67 11.2M 67 7774k 0 0 2468k 0 0:00:04 0:00:03 0:00:01 2467k 100 11.2M 100 11.2M 0 0 2881k 0 0:00:04 0:00:04 --:--:-- 2882k install for i386 * installing *source* package 'msPurity' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'msPurity' finding HTML links ... done Getfiles html assessPuritySingle html averageAllFragSpectra-purityA-method html averageInterFragSpectra-purityA-method html averageIntraFragSpectra-purityA-method html averageSpectra-purityD-method html averageSpectraSingle html combineAnnotations html createDatabase html createMSP-purityA-method html create_database html dimsPredictPurity-purityD-method html dimsPredictPuritySingle html filterFragSpectra-purityA-method html filterp-purityD-method html flag_remove html frag4feature-purityA-method html getP-purityD-method html get_additional_mzml_meta html groupPeaks-purityD-method html groupPeaksEx html initialize-purityD-method html iwNormGauss html iwNormQE.5 html iwNormRcosine html msPurity html pcalc html purityA html purityD-class html purityX html show-purityA-method html show-purityD-method html show-purityX-method html spectralMatching html spectral_matching html subtract-purityD-method html subtractMZ html validate-purityA-method html writeOut-purityD-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'msPurity' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'msPurity' as msPurity_1.20.0.zip * DONE (msPurity) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'msPurity' successfully unpacked and MD5 sums checked