############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/mina_1.2.0.tar.gz && rm -rf mina.buildbin-libdir && mkdir mina.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mina.buildbin-libdir mina_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL mina_1.2.0.zip && rm mina_1.2.0.tar.gz mina_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 4435k 1 78199 0 0 401k 0 0:00:11 --:--:-- 0:00:11 401k 32 4435k 32 1450k 0 0 1203k 0 0:00:03 0:00:01 0:00:02 1203k 72 4435k 72 3216k 0 0 1477k 0 0:00:03 0:00:02 0:00:01 1477k 100 4435k 100 4435k 0 0 1541k 0 0:00:02 0:00:02 --:--:-- 1541k install for i386 * installing *source* package 'mina' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cp_cor.cpp -o cp_cor.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mina.dll tmp.def RcppExports.o cp_cor.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mina.buildbin-libdir/00LOCK-mina/00new/mina/libs/i386 ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading Creating a new generic function for 'norm' in package 'mina' ** help *** installing help indices converting help for package 'mina' finding HTML links ... done adj-matrix html adj-mina html adj html adj_accessor html adj_method_list html bs_pm-mina html bs_pm html bs_pm_accessor html check_mina html check_mina_de html check_mina_qu html cls html cls_accessor html cls_tab html cls_tab_accessor html com_dis-matrix html com_dis-mina html com_dis html com_dis_list html com_plot-mina html com_plot html com_r2-mina html com_r2 html cp_cor html data-hmp html data-maize html des_accessor html dis_accessor html dis_stat_accessor html dmr-matrix html dmr-mina html dmr html dmr_accessor html filter_mat html fit_tabs-mina html fit_tabs html get_contrast html get_contrast_grp html get_dis_df html get_ja html get_ja0 html get_ja0_grp html get_ja_grp html get_net_cls_tab-matrix-data.frame-method html get_net_cls_tab html get_r2-mat html get_r2 html get_rep-matrix html get_rep-mima html get_spectra html get_stat html hmp_des html hmp_otu html maize_asv html maize_asv2 html maize_des html maize_des2 html mat_or_NULL-class html mina-class html net_cls-matrix html net_cls-mina html net_cls html net_cls_tab-mina-method html net_cls_tab html net_dis-mina html net_dis html net_dis_accessor html net_dis_indi html net_dis_pcoa html net_dis_plot html net_grp_cmp html net_node_cmp html norm_accessor html norm_by_raref html norm_by_total html norm_tab-matrix html norm_tab-mina html norm_tab html norm_tab_method_list html pcoa_plot html rarefaction_subsample html re_format_AP html re_format_MCL html sim_par html sparcc html tab_accessor html tina-matrix-method html tina html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'mina' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cp_cor.cpp -o cp_cor.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o mina.dll tmp.def RcppExports.o cp_cor.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mina.buildbin-libdir/mina/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'mina' as mina_1.2.0.zip * DONE (mina) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'mina' successfully unpacked and MD5 sums checked