############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metabCombiner_1.4.0.tar.gz && rm -rf metabCombiner.buildbin-libdir && mkdir metabCombiner.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metabCombiner.buildbin-libdir metabCombiner_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metabCombiner_1.4.0.zip && rm metabCombiner_1.4.0.tar.gz metabCombiner_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 2 2281k 2 49737 0 0 315k 0 0:00:07 --:--:-- 0:00:07 315k 64 2281k 64 1461k 0 0 1267k 0 0:00:01 0:00:01 --:--:-- 1267k 100 2281k 100 2281k 0 0 1492k 0 0:00:01 0:00:01 --:--:-- 1491k install for i386 * installing *source* package 'metabCombiner' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binByMZ.c -o binByMZ.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findDuplicates.c -o findDuplicates.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c labelRows.c -o labelRows.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metabCombiner_init.c -o metabCombiner_init.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c resolveRows.c -o resolveRows.o resolveRows.c: In function 'resolveRows': resolveRows.c:250:6: warning: variable 'sgnum' set but not used [-Wunused-but-set-variable] int sgnum = 0; ^~~~~ resolveRows.c:249:14: warning: unused variable 'filename' [-Wunused-variable] const char *filename = "output.txt"; ^~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c selectAnchors.c -o selectAnchors.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c write2file.c -o write2file.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o resolveRows.o selectAnchors.o write2file.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metabCombiner.buildbin-libdir/00LOCK-metabCombiner/00new/metabCombiner/libs/i386 ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'metabCombiner' finding HTML links ... done Qdata html adductdata html adjustData html batchCombine html calcScores html calcScoresParam html combinedTable html combinerCheck html crossValFit html datasets html detectFields html evaluateParams html featdata html filterAnchors html filterRT html findDuplicates html fit_gam html fit_loess html fitgamParam html fitloessParam html getAnchors html getCoefficients html getData html getExtra html getModel html getSamples html getStats html iddata html identityAnchorSelection html isCombinedTable html isMetabCombiner html isMetabData html iterativeAnchorSelection html labelRows html labelRowsParam html metabBatches html metabCombine html metabCombiner-class html metabCombiner html metabData-class html metabData html mzGroup html mzdata html nonmatched html objective html plasma20 html plasma30 html plot_fit html rtdata html scorePairs html selectAnchors html selectAnchorsParam html write2file html x html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'metabCombiner' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c binByMZ.c -o binByMZ.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c findDuplicates.c -o findDuplicates.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c labelRows.c -o labelRows.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metabCombiner_init.c -o metabCombiner_init.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c resolveRows.c -o resolveRows.o resolveRows.c: In function 'resolveRows': resolveRows.c:250:6: warning: variable 'sgnum' set but not used [-Wunused-but-set-variable] int sgnum = 0; ^~~~~ resolveRows.c:249:14: warning: unused variable 'filename' [-Wunused-variable] const char *filename = "output.txt"; ^~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c selectAnchors.c -o selectAnchors.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c write2file.c -o write2file.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metabCombiner.dll tmp.def binByMZ.o findDuplicates.o labelRows.o metabCombiner_init.o resolveRows.o selectAnchors.o write2file.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metabCombiner.buildbin-libdir/metabCombiner/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'metabCombiner' as metabCombiner_1.4.0.zip * DONE (metabCombiner) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'metabCombiner' successfully unpacked and MD5 sums checked