############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fCI_1.24.0.tar.gz && rm -rf fCI.buildbin-libdir && mkdir fCI.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fCI.buildbin-libdir fCI_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fCI_1.24.0.zip && rm fCI_1.24.0.tar.gz fCI_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 884k 100 884k 0 0 1026k 0 --:--:-- --:--:-- --:--:-- 1026k install for i386 * installing *source* package 'fCI' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for 'initialize' with signature '"NPCI"': no definition for class "NPCI" in method for 'normalization' with signature '"NPCI"': no definition for class "NPCI" in method for 'setfCI' with signature '"NPCI"': no definition for class "NPCI" in method for 'populate' with signature '"NPCI"': no definition for class "NPCI" in method for 'find.fci.targets' with signature '"NPCI"': no definition for class "NPCI" in method for 'show.targets' with signature '"NPCI"': no definition for class "NPCI" in method for 'call.npci' with signature '"NPCI"': no definition for class "NPCI" in method for 'compute' with signature '"NPCI"': no definition for class "NPCI" ** help *** installing help indices converting help for package 'fCI' finding HTML links ... done NPCI-class html call.npci-methods html call.npci html compute-methods html compute html deg.pairwise.fold.change html deg.up.down.info html deseq.median.ratio.normalization html divergence.multivariate.distributions html fCI-class html fCI.call.by.index html fci.data html figures-methods html figures html find.fci.targets-methods html find.fci.targets html find.mid.point html get.fold.large.step html get.npci.data html get.npci.distance.matrix html get.outline.index html get.protein.fold.step html get.rank.combinations html get.rna.fold.step html initialize-methods html intersect.of.lists html is.installed html multi.dimensional.fci.data html normalization-methods html normalization html npci.gene.by.pvalues html npci.index.reconsidered html npci.index.to.be.removed html npci.venn.diagram html pairwise.change.occupancy html populate-methods html populate html report.target.summary html setfCI-methods html setfCI html show.targets-methods html show.targets html summarize-methods html summarize html total.library.size.normalization html trim.size.normalization html two.sample.log.ratio html two.sample.permutation.test html venndiagram-methods html venndiagram html ** building package indices ** installing vignettes 'fCI.Rmd' ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'fCI' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'fCI' as fCI_1.24.0.zip * DONE (fCI) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'fCI' successfully unpacked and MD5 sums checked