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### Running command:
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###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:bluster.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings bluster_1.4.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/bluster.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bluster/DESCRIPTION' ... OK
* this is package 'bluster' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bluster' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/bluster/libs/i386/bluster.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/bluster/libs/x64/bluster.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
MbkmeansParam-class 4.59   0.32    5.39
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                    user system elapsed
MbkmeansParam-class 4.81   0.14    5.01
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  out$clusters[, choice] not identical to clusterRows(x, param).
  109 string mismatches
  -- Failure (test-sweep.R:11:9): clusterSweep works correctly in simple cases ---
  out$clusters[, choice] not identical to clusterRows(x, param).
  133 string mismatches
  -- Failure (test-sweep.R:21:9): clusterSweep works correctly in simple cases ---
  out$clusters[, choice] not identical to clusterRows(x, param).
  92 string mismatches
  -- Failure (test-sweep.R:31:5): clusterSweep reports full objects correctly ----
  out[1:2] not identical to `ref`.
  Attributes: < Component "listData": Component "clusters": Attributes: < Component "listData": Component "cluster.fun.louvain": 136 string mismatches > >
  
  [ FAIL 6 | WARN 1 | SKIP 0 | PASS 2222 ]
  Error: Test failures
  Execution halted
** running tests for arch 'x64' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
  out$clusters[, choice] not identical to clusterRows(x, param).
  109 string mismatches
  -- Failure (test-sweep.R:11:9): clusterSweep works correctly in simple cases ---
  out$clusters[, choice] not identical to clusterRows(x, param).
  133 string mismatches
  -- Failure (test-sweep.R:21:9): clusterSweep works correctly in simple cases ---
  out$clusters[, choice] not identical to clusterRows(x, param).
  92 string mismatches
  -- Failure (test-sweep.R:31:5): clusterSweep reports full objects correctly ----
  out[1:2] not identical to `ref`.
  Attributes: < Component "listData": Component "clusters": Attributes: < Component "listData": Component "cluster.fun.louvain": 136 string mismatches > >
  
  [ FAIL 6 | WARN 1 | SKIP 0 | PASS 2222 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 ERRORs, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/bluster.Rcheck/00check.log'
for details.