############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/annaffy_1.66.0.tar.gz && rm -rf annaffy.buildbin-libdir && mkdir annaffy.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=annaffy.buildbin-libdir annaffy_1.66.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL annaffy_1.66.0.zip && rm annaffy_1.66.0.tar.gz annaffy_1.66.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 71147 100 71147 0 0 451k 0 --:--:-- --:--:-- --:--:-- 454k install for i386 * installing *source* package 'annaffy' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'annaffy' finding HTML links ... done aaf.character html aaf.goterm html aaf.handler html aaf.integer html aaf.raw html aafChromLoc-class html aafChromLoc html aafChromosome-class html aafChromosome html aafCytoband-class html aafCytoband html aafDescription-class html aafDescription html aafExpr html aafGO-class html aafGO html aafGOItem-class html aafGenBank-class html aafGenBank html aafIntensity-class html aafList-class html aafLocusLink-class html aafLocusLink html aafPathway-class html aafPathway html aafPathwayItem-class html aafProbe-class html aafProbe html aafPubMed-class html aafPubMed html aafSearchGO html aafSearchText html aafSigned-class html aafSymbol-class html aafSymbol html aafTable-class html aafTable html aafTableAnn html aafTableFrame html aafTableInt html chkPkgs html getCSS-methods html getHTML-methods html getTD-methods html getText-methods html getURL-methods html finding level-2 HTML links ... done Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpE54ckG/R.INSTALL159c7562837/annaffy/man/getURL-methods.Rd:25: missing link 'aafUniGene-class' is.annpkg html selectorWidget html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'annaffy' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'annaffy' as annaffy_1.66.0.zip * DONE (annaffy) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'annaffy' successfully unpacked and MD5 sums checked