############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/abseqR_1.12.0.tar.gz && rm -rf abseqR.buildbin-libdir && mkdir abseqR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=abseqR.buildbin-libdir abseqR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL abseqR_1.12.0.zip && rm abseqR_1.12.0.tar.gz abseqR_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 42 1519k 42 649k 0 0 911k 0 0:00:01 --:--:-- 0:00:01 911k 100 1519k 100 1519k 0 0 1198k 0 0:00:01 0:00:01 --:--:-- 1199k install for i386 * installing *source* package 'abseqR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'abseqR' finding HTML links ... done AbSeqCRep-class html AbSeqRep-class html abseqReport html dot-UTR5Analysis html dot-abundanceAnalysis html dot-abundancePlot html dot-alignQualityHeatMaps html dot-allPrimerNames html dot-aminoAcidBar html dot-aminoAcidPlot html dot-analyzeUpstreamValidity html dot-annotAnalysis html dot-asRepertoireAlignLen html dot-asRepertoireBitscore html dot-asRepertoireChain html dot-asRepertoireDir html dot-asRepertoireList html dot-asRepertoireName html dot-asRepertoirePrimer3 html dot-asRepertoirePrimer5 html dot-asRepertoireQueryStart html dot-asRepertoireSubjectStart html dot-asRepertoireUpstream html dot-boxPlot html dot-calculateDInd html dot-calculateDiversityEstimates html dot-canonicalizeTitle html dot-capitalize html dot-checkVert html dot-cloneDistHist html dot-cloneDistMarginal html dot-clonotypeAnalysis html dot-collateReports html dot-commonPrimerNames html dot-correlationTest html dot-distanceMeasure html dot-diversityAnalysis html dot-emptyPlot html dot-findRepertoires html dot-generateAllSpectratypes html dot-generateDelayedReport html dot-generateReport html dot-getLineTypes html dot-getTotal html dot-hmFromMatrix html dot-inferAnalyzed html dot-loadMatrixFromDF html dot-loadSamplesFromString html dot-pairwiseComparison html dot-plotCirclize html dot-plotDist html dot-plotDiversityCurves html dot-plotDuplication html dot-plotErrorDist html dot-plotIGVErrors html dot-plotIGVUpstreamLenDist html dot-plotIGVUpstreamLenDistDetailed html dot-plotPrimerIGVStatus html dot-plotPrimerIntegrity html dot-plotRarefaction html dot-plotRecapture html dot-plotSamples html dot-plotSpectratype html dot-plotUpstreamLength html dot-plotUpstreamLengthDist html dot-primerAnalysis html dot-prodDistPlot html dot-productivityAnalysis html dot-productivityPlot html dot-readSummary html dot-regionAnalysis html dot-reportLBE html dot-saveAs html dot-scatterPlot html dot-scatterPlotComplex html dot-secretionSignalAnalysis html dot-substituteStringInFile html dot-summarySE html dot-topNDist html dot-vennIntersection html plus-AbSeqCRep-AbSeqCRep-method html plus-AbSeqCRep-AbSeqRep-method html plus-AbSeqRep-AbSeqCRep-method html plus-AbSeqRep-AbSeqRep-method html report html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'abseqR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'abseqR' as abseqR_1.12.0.zip * DONE (abseqR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'abseqR' successfully unpacked and MD5 sums checked