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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/XCIR_1.8.0.tar.gz && rm -rf XCIR.buildbin-libdir && mkdir XCIR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XCIR.buildbin-libdir XCIR_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL XCIR_1.8.0.zip && rm XCIR_1.8.0.tar.gz XCIR_1.8.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 27 1969k   27  544k    0     0   969k      0  0:00:02 --:--:--  0:00:02  970k
100 1969k  100 1969k    0     0  1432k      0  0:00:01  0:00:01 --:--:-- 1433k

install for i386

* installing *source* package 'XCIR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'XCIR'
    finding HTML links ... done
    BetaConversion                          html  
    XCIR-package                            html  
    addAnno                                 html  
    annotateX                               html  
    annotates_snps                          html  
    betaBinomXI                             html  
    consensusXCI                            html  
    getGenicDP                              html  
    getXCIstate                             html  
    mart_genes                              html  
    plotQC                                  html  
    readRNASNPs                             html  
    readVCF4                                html  
    readXCI                                 html  
    readXVcf                                html  
    sample_clean                            html  
    xci_calls                               html  
    xci_qc                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'XCIR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XCIR' as XCIR_1.8.0.zip
* DONE (XCIR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'XCIR' successfully unpacked and MD5 sums checked