############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ViSEAGO_1.8.0.tar.gz && rm -rf ViSEAGO.buildbin-libdir && mkdir ViSEAGO.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ViSEAGO.buildbin-libdir ViSEAGO_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ViSEAGO_1.8.0.zip && rm ViSEAGO_1.8.0.tar.gz ViSEAGO_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 6608k 5 341k 0 0 1121k 0 0:00:05 --:--:-- 0:00:05 1122k 58 6608k 58 3875k 0 0 2967k 0 0:00:02 0:00:01 0:00:01 2967k 100 6608k 100 6608k 0 0 3407k 0 0:00:01 0:00:01 --:--:-- 3406k install for i386 * installing *source* package 'ViSEAGO' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO' ** help *** installing help indices converting help for package 'ViSEAGO' finding HTML links ... done Bioconductor2GO html Custom2GO html Ensembl2GO html EntrezGene2GO html EntrezGene_orthologs html GO_SS-class html GO_clusters-class html GOclusters_heatmap-methods html GOcount-methods html GOterms_heatmap-methods html MDSplot-methods html Uniprot2GO html Upset-methods html ViSEAGO html annotate-methods html available_organisms-methods html build_GO_SS-methods html clusters_cor-methods html compare_clusters-methods html compute_SS_distances-methods html create_topGOdata-methods html enrich_GO_terms-class html fgsea-class html gene2GO-class html genomic_ressource-class html merge_enrich_terms-methods html myGOs html overLapper html finding level-2 HTML links ... done pkgdiagram html runfgsea-methods html show_heatmap-methods html show_table-methods html taxonomy html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO' ** testing if installed package can be loaded from final location Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ViSEAGO' ... ** testing if installed package can be loaded Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO' * MD5 sums packaged installation of 'ViSEAGO' as ViSEAGO_1.8.0.zip * DONE (ViSEAGO) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ViSEAGO' successfully unpacked and MD5 sums checked