############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf TileDBArray.buildbin-libdir && mkdir TileDBArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TileDBArray_1.4.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R TileDBArray.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TileDBArray.buildbin-libdir TileDBArray_1.4.0.tar.gz' >>>>>>> * installing *source* package ‘TileDBArray’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c remap_indices.cpp -o remap_indices.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o TileDBArray.so RcppExports.o remap_indices.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.14-bioc/meat/TileDBArray.buildbin-libdir/00LOCK-TileDBArray/00new/TileDBArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Warning in system2(pkgcfg, c("tiledb", "--cflags"), stdout = TRUE) : running command ''/usr/local/bin/pkg-config' tiledb --cflags' had status 1 Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Warning in system2(pkgcfg, c("tiledb", "--libs"), stdout = TRUE) : running command ''/usr/local/bin/pkg-config' tiledb --libs' had status 1 ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Warning in system2(pkgcfg, c("tiledb", "--cflags"), stdout = TRUE) : running command ''/usr/local/bin/pkg-config' tiledb --cflags' had status 1 Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Warning in system2(pkgcfg, c("tiledb", "--libs"), stdout = TRUE) : running command ''/usr/local/bin/pkg-config' tiledb --libs' had status 1 ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Warning in system2(pkgcfg, c("tiledb", "--cflags"), stdout = TRUE) : running command ''/usr/local/bin/pkg-config' tiledb --cflags' had status 1 Package tiledb was not found in the pkg-config search path. Perhaps you should add the directory containing `tiledb.pc' to the PKG_CONFIG_PATH environment variable No package 'tiledb' found Warning in system2(pkgcfg, c("tiledb", "--libs"), stdout = TRUE) : running command ''/usr/local/bin/pkg-config' tiledb --libs' had status 1 ** testing if installed package keeps a record of temporary installation path * DONE (TileDBArray) >>>>>>> >>>>>>> FIXING LINKS FOR TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so"