############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/OrganismDbi_1.36.0.tar.gz && rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.36.0.zip && rm OrganismDbi_1.36.0.tar.gz OrganismDbi_1.36.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 58633 100 58633 0 0 359k 0 --:--:-- --:--:-- --:--:-- 362k install for i386 * installing *source* package 'OrganismDbi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'OrganismDbi' finding HTML links ... done OrganismDb html finding level-2 HTML links ... done Rd warning: C:/Users/biocbuild/bbs-3.14-bioc/tmpdir/Rtmp6zr1dD/R.INSTALL25f431a2a03/OrganismDbi/man/OrganismDb.Rd:191: missing link 'GenomeInfoDb' coordinate-mapping-method html makeOrganismDbFromBiomart html makeOrganismDbFromTxDb html makeOrganismDbFromUCSC html makeOrganismPackage html rangeBasedAccessors html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'OrganismDbi' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'OrganismDbi' as OrganismDbi_1.36.0.zip * DONE (OrganismDbi) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'OrganismDbi' successfully unpacked and MD5 sums checked