##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HiCcompare_1.16.0.tar.gz && rm -rf HiCcompare.buildbin-libdir && mkdir HiCcompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCcompare.buildbin-libdir HiCcompare_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HiCcompare_1.16.0.zip && rm HiCcompare_1.16.0.tar.gz HiCcompare_1.16.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 16 3211k   16  521k    0     0   584k      0  0:00:05 --:--:--  0:00:05  584k
 61 3211k   61 1976k    0     0  1047k      0  0:00:03  0:00:01  0:00:02 1047k
100 3211k  100 3211k    0     0  1315k      0  0:00:02  0:00:02 --:--:-- 1315k

install for i386

* installing *source* package 'HiCcompare' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'ceiling' 
** help
*** installing help indices
  converting help for package 'HiCcompare'
    finding HTML links ... done
    HMEC.chr10                              html  
    HMEC.chr22                              html  
    HiCcompare-package                      html  
    KRnorm                                  html  
    MA_norm                                 html  
    MD.plot1                                html  
    MD.plot2                                html  
    NHEK.chr10                              html  
    NHEK.chr22                              html  
    SCN                                     html  
    brain_table                             html  
    centromere_locations                    html  
    cooler                                  html  
    cooler2bedpe                            html  
    cooler2sparse                           html  
    create.hic.table                        html  
    filter_params                           html  
    full2sparse                             html  
    get_CNV                                 html  
    hg19_blacklist                          html  
    hg38_blacklist                          html  
    hic_compare                             html  
    hic_diff                                html  
    hic_loess                               html  
    hic_simulate                            html  
    hicpro2bedpe                            html  
    hmec.IS                                 html  
    make_InteractionSet                     html  
    manhattan_plot                          html  
    nhek.IS                                 html  
    remove_centromere                       html  
    sim.other.methods                       html  
    sim_matrix                              html  
    sparse2full                             html  
    split_centromere                        html  
    total_sum                               html  
    visualize_pvals                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HiCcompare' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCcompare' as HiCcompare_1.16.0.zip
* DONE (HiCcompare)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'HiCcompare' successfully unpacked and MD5 sums checked