############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GlobalAncova_4.12.0.tar.gz && rm -rf GlobalAncova.buildbin-libdir && mkdir GlobalAncova.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GlobalAncova.buildbin-libdir GlobalAncova_4.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GlobalAncova_4.12.0.zip && rm GlobalAncova_4.12.0.tar.gz GlobalAncova_4.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 67 607k 67 411k 0 0 763k 0 --:--:-- --:--:-- --:--:-- 762k 100 607k 100 607k 0 0 882k 0 --:--:-- --:--:-- --:--:-- 882k install for i386 * installing *source* package 'GlobalAncova' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c GlobalAncova.c -o GlobalAncova.o GlobalAncova.c: In function 'permut_withFperm': GlobalAncova.c:166:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized] int *ord_perm ; ^~~~~~~~ GlobalAncova.c: In function 'permut': GlobalAncova.c:268:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized] int *ord_perm ; ^~~~~~~~ "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ludcmp.c -o ludcmp.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c matrix.c -o matrix.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GlobalAncova.buildbin-libdir/00LOCK-GlobalAncova/00new/GlobalAncova/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GlobalAncova' finding HTML links ... done GAhier-class html GlobalAncova-methods html GlobalAncova html GlobalAncova.closed-methods html GlobalAncova.closed html GlobalAncova.decomp html Plot.all html Plot.features html Plot.genes-methods html Plot.genes html Plot.sequential html Plot.subjects-methods html Plot.subjects html bindata html colon.normal html colon.pheno html colon.tumour html gGlobalAncova html gGlobalAncova.hierarchical html genesettesting html pair.compare html pathways html phenodata html vantVeer html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GlobalAncova' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c GlobalAncova.c -o GlobalAncova.o GlobalAncova.c: In function 'permut_withFperm': GlobalAncova.c:166:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized] int *ord_perm ; ^~~~~~~~ GlobalAncova.c: In function 'permut': GlobalAncova.c:268:8: warning: 'ord_perm' may be used uninitialized in this function [-Wmaybe-uninitialized] int *ord_perm ; ^~~~~~~~ "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ludcmp.c -o ludcmp.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c matrix.c -o matrix.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GlobalAncova.dll tmp.def GlobalAncova.o ludcmp.o matrix.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/GlobalAncova.buildbin-libdir/GlobalAncova/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GlobalAncova' as GlobalAncova_4.12.0.zip * DONE (GlobalAncova) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'GlobalAncova' successfully unpacked and MD5 sums checked