############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/FlowSOM_2.2.0.tar.gz && rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL FlowSOM_2.2.0.zip && rm FlowSOM_2.2.0.tar.gz FlowSOM_2.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 34 1197k 34 419k 0 0 1557k 0 --:--:-- --:--:-- --:--:-- 1558k 100 1197k 100 1197k 0 0 2428k 0 --:--:-- --:--:-- --:--:-- 2428k install for i386 * installing *source* package 'FlowSOM' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c som.c -o som.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/FlowSOM.buildbin-libdir/00LOCK-FlowSOM/00new/FlowSOM/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'FlowSOM' finding HTML links ... done AddAnnotation html AddBackground html AddFlowFrame html AddLabels html AddMST html AddNodes html AddPies html AddScale html AddStars html AddStarsPies html AggregateFlowFrames html AutoMaxNodeSize html BuildMST html BuildSOM html CountGroups html Dist.MST html FMeasure html FlowSOM html FlowSOMSubset html FlowSOM_colors html FlowSOMmary html GetCVs html GetChannels html GetClusterCVs html GetClusterMFIs html GetClusters html GetCounts html GetFeatures html GetFlowJoLabels html finding level-2 HTML links ... done GetMFIs html GetMarkers html GetMetaclusterCVs html GetMetaclusterMFIs html GetMetaclusters html GetPercentages html GroupStats html Initialize_KWSP html Initialize_PCA html ManualVector html MapDataToCodes html MetaClustering html MetaclusterCVs html MetaclusterMFIs html NClusters html NMetaclusters html NewData html ParseArcs html ParseEdges html ParseLayout html ParseNodeSize html ParseQuery html ParseSD html Plot2DScatters html PlotCenters html PlotClusters2D html PlotDimRed html PlotFileScatters html PlotFlowSOM html PlotGroups html PlotLabels html PlotManualBars html PlotMarker html PlotNode html PlotNumbers html PlotOverview2D html PlotPies html PlotSD html PlotStars html PlotVariable html Purity html QueryMultiple html QueryStarPlot html ReadInput html SOM html SaveClustersToFCS html ScaleStarHeights html TestOutliers html UpdateFlowSOM html UpdateMetaclusters html UpdateNodeSize html get_channels html get_markers html gg_color_hue html metaClustering_consensus html pipe html plotStarLegend html print.FlowSOM html query_multiple html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'FlowSOM' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c som.c -o som.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/FlowSOM.buildbin-libdir/FlowSOM/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'FlowSOM' as FlowSOM_2.2.0.zip * DONE (FlowSOM) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'FlowSOM' successfully unpacked and MD5 sums checked