############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BloodGen3Module_1.2.0.tar.gz && rm -rf BloodGen3Module.buildbin-libdir && mkdir BloodGen3Module.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BloodGen3Module.buildbin-libdir BloodGen3Module_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BloodGen3Module_1.2.0.zip && rm BloodGen3Module_1.2.0.tar.gz BloodGen3Module_1.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 97 172k 97 167k 0 0 442k 0 --:--:-- --:--:-- --:--:-- 442k 100 172k 100 172k 0 0 259k 0 --:--:-- --:--:-- --:--:-- 259k install for i386 * installing *source* package 'BloodGen3Module' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'SummarizedExperiment::rowRanges' by 'matrixStats::rowRanges' when loading 'BloodGen3Module' Warning: replacing previous import 'SummarizedExperiment::start' by 'stats::start' when loading 'BloodGen3Module' Warning: replacing previous import 'SummarizedExperiment::end' by 'stats::end' when loading 'BloodGen3Module' Warning: replacing previous import 'matrixStats::rowRanges' by 'SummarizedExperiment::rowRanges' when loading 'BloodGen3Module' ** help *** installing help indices converting help for package 'BloodGen3Module' finding HTML links ... done Gen3_ann html Groupcomparison html Groupcomparisonlimma html Individualcomparison html Module_listGen3 html color html fingerprintplot html fold_change html gridplot html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'SummarizedExperiment::rowRanges' by 'matrixStats::rowRanges' when loading 'BloodGen3Module' Warning: replacing previous import 'SummarizedExperiment::start' by 'stats::start' when loading 'BloodGen3Module' Warning: replacing previous import 'SummarizedExperiment::end' by 'stats::end' when loading 'BloodGen3Module' Warning: replacing previous import 'matrixStats::rowRanges' by 'SummarizedExperiment::rowRanges' when loading 'BloodGen3Module' ** testing if installed package can be loaded from final location Warning: replacing previous import 'SummarizedExperiment::rowRanges' by 'matrixStats::rowRanges' when loading 'BloodGen3Module' Warning: replacing previous import 'SummarizedExperiment::start' by 'stats::start' when loading 'BloodGen3Module' Warning: replacing previous import 'SummarizedExperiment::end' by 'stats::end' when loading 'BloodGen3Module' Warning: replacing previous import 'matrixStats::rowRanges' by 'SummarizedExperiment::rowRanges' when loading 'BloodGen3Module' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BloodGen3Module' ... ** testing if installed package can be loaded Warning: replacing previous import 'SummarizedExperiment::rowRanges' by 'matrixStats::rowRanges' when loading 'BloodGen3Module' Warning: replacing previous import 'SummarizedExperiment::start' by 'stats::start' when loading 'BloodGen3Module' Warning: replacing previous import 'SummarizedExperiment::end' by 'stats::end' when loading 'BloodGen3Module' Warning: replacing previous import 'matrixStats::rowRanges' by 'SummarizedExperiment::rowRanges' when loading 'BloodGen3Module' * MD5 sums packaged installation of 'BloodGen3Module' as BloodGen3Module_1.2.0.zip * DONE (BloodGen3Module) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'BloodGen3Module' successfully unpacked and MD5 sums checked