############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BiocGenerics_0.40.0.tar.gz && rm -rf BiocGenerics.buildbin-libdir && mkdir BiocGenerics.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocGenerics.buildbin-libdir BiocGenerics_0.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BiocGenerics_0.40.0.zip && rm BiocGenerics_0.40.0.tar.gz BiocGenerics_0.40.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 47390 100 47390 0 0 107k 0 --:--:-- --:--:-- --:--:-- 107k install for i386 * installing *source* package 'BiocGenerics' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'append' in package 'BiocGenerics' Creating a new generic function for 'as.data.frame' in package 'BiocGenerics' Creating a new generic function for 'cbind' in package 'BiocGenerics' Creating a new generic function for 'rbind' in package 'BiocGenerics' Creating a new generic function for 'do.call' in package 'BiocGenerics' Creating a new generic function for 'duplicated' in package 'BiocGenerics' Creating a new generic function for 'anyDuplicated' in package 'BiocGenerics' Creating a new generic function for 'eval' in package 'BiocGenerics' Creating a new generic function for 'pmax' in package 'BiocGenerics' Creating a new generic function for 'pmin' in package 'BiocGenerics' Creating a new generic function for 'pmax.int' in package 'BiocGenerics' Creating a new generic function for 'pmin.int' in package 'BiocGenerics' Creating a new generic function for 'Reduce' in package 'BiocGenerics' Creating a new generic function for 'Filter' in package 'BiocGenerics' Creating a new generic function for 'Find' in package 'BiocGenerics' Creating a new generic function for 'Map' in package 'BiocGenerics' Creating a new generic function for 'Position' in package 'BiocGenerics' Creating a new generic function for 'get' in package 'BiocGenerics' Creating a new generic function for 'mget' in package 'BiocGenerics' Creating a new generic function for 'grep' in package 'BiocGenerics' Creating a new generic function for 'grepl' in package 'BiocGenerics' Creating a new generic function for 'is.unsorted' in package 'BiocGenerics' Creating a new generic function for 'lapply' in package 'BiocGenerics' Creating a new generic function for 'sapply' in package 'BiocGenerics' Creating a new generic function for 'mapply' in package 'BiocGenerics' Creating a new generic function for 'match' in package 'BiocGenerics' Creating a new generic function for 'order' in package 'BiocGenerics' Creating a new generic function for 'paste' in package 'BiocGenerics' Creating a new generic function for 'rank' in package 'BiocGenerics' Creating a new generic function for 'rownames' in package 'BiocGenerics' Creating a new generic function for 'colnames' in package 'BiocGenerics' Creating a new generic function for 'union' in package 'BiocGenerics' Creating a new generic function for 'intersect' in package 'BiocGenerics' Creating a new generic function for 'setdiff' in package 'BiocGenerics' Creating a new generic function for 'sort' in package 'BiocGenerics' Creating a new generic function for 'table' in package 'BiocGenerics' Creating a new generic function for 'tapply' in package 'BiocGenerics' Creating a new generic function for 'unique' in package 'BiocGenerics' Creating a new generic function for 'unsplit' in package 'BiocGenerics' Creating a new generic function for 'var' in package 'BiocGenerics' Creating a new generic function for 'sd' in package 'BiocGenerics' Creating a new generic function for 'which.min' in package 'BiocGenerics' Creating a new generic function for 'which.max' in package 'BiocGenerics' Creating a new generic function for 'IQR' in package 'BiocGenerics' Creating a new generic function for 'mad' in package 'BiocGenerics' Creating a new generic function for 'xtabs' in package 'BiocGenerics' Creating a new generic function for 'basename' in package 'BiocGenerics' Creating a new generic function for 'dirname' in package 'BiocGenerics' ** help *** installing help indices converting help for package 'BiocGenerics' finding HTML links ... done BiocGenerics-package html Extremes html IQR html Ontology html S3-classes-as-S4-classes html annotation html append html as.data.frame html as.list html as.vector html boxplot html cbind html colSums html combine html dbconn html density html dge html dims html do.call html duplicated html eval html evalq html fileName html funprog html get html grep html image html is.unsorted html lapply html mad html mapply html match html mean html normalize html nrow html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/BiocGenerics.buildbin-libdir/00LOCK-BiocGenerics/00new/BiocGenerics/help/NROW.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/BiocGenerics.buildbin-libdir/00LOCK-BiocGenerics/00new/BiocGenerics/help/NCOL.html order html organism_species html paste html path html plotMA html plotPCA html rank html relist html rep html residuals html row_colnames html score html sets html sort html start html strand html subset html t html table html tapply html testPackage html toTable html type html unique html unlist html unsplit html updateObject html var html weights html which html which.min html xtabs html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BiocGenerics' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'BiocGenerics' as BiocGenerics_0.40.0.zip * DONE (BiocGenerics) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'BiocGenerics' successfully unpacked and MD5 sums checked