############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BPRMeth_1.20.0.tar.gz && rm -rf BPRMeth.buildbin-libdir && mkdir BPRMeth.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BPRMeth.buildbin-libdir BPRMeth_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BPRMeth_1.20.0.zip && rm BPRMeth_1.20.0.tar.gz BPRMeth_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 8 3345k 8 268k 0 0 883k 0 0:00:03 --:--:-- 0:00:03 884k 100 3345k 100 3345k 0 0 2849k 0 0:00:01 0:00:01 --:--:-- 2852k install for i386 * installing *source* package 'BPRMeth' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_likelihood.cpp -o model_likelihood.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BPRMeth.buildbin-libdir/00LOCK-BPRMeth/00new/BPRMeth/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'BPRMeth' finding HTML links ... done BPRMeth html bernoulli_data html beta_data html binomial_data html boxplot_cluster_expr html bpr_cluster_wrap html bpr_optimize html bpr_predict_wrap html cluster_profiles_mle html cluster_profiles_vb html create_anno_region html create_basis html create_region_object html design_matrix html encode_expr html encode_met html eval_functions html gaussian_data html gex_data html impute_bulk_met html infer_profiles_gibbs html infer_profiles_mle html infer_profiles_vb html inner_predict_model_expr html inner_train_model_expr html meth_data html model_log_likelihood html old_boxplot_cluster_gex html old_plot_cluster_prof html old_plot_fitted_profiles html partition_bulk_dataset html plot_cluster_profiles html plot_infer_profiles html finding level-2 HTML links ... done plot_predicted_expr html pool_bs_seq_rep html predict_expr html preprocess_bs_seq html preprocess_final_HTS_data html process_haib_caltech_wrap html read_anno html read_bs_encode_haib html read_chrom_size html read_expr html read_met html read_rna_encode_caltech html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'BPRMeth' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_likelihood.cpp -o model_likelihood.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BPRMeth.dll tmp.def RcppExports.o model_likelihood.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/BPRMeth.buildbin-libdir/BPRMeth/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'BPRMeth' as BPRMeth_1.20.0.zip * DONE (BPRMeth) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'BPRMeth' successfully unpacked and MD5 sums checked