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### Running command:
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###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:variancePartition.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings variancePartition_1.22.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/variancePartition.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'variancePartition/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'variancePartition' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'variancePartition' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'lme4:::reOnly'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                     user system elapsed
fitVarPartModel-method              44.82   8.00  104.86
extractVarPart                      26.01   8.11   68.02
residuals-VarParFitList-method      14.72   2.49   35.81
fitExtractVarPartModel-method       11.43   3.09   50.23
plotCompareP-method                  7.58   1.84   27.01
plotVarPart-method                   5.85   1.45   24.14
plotPercentBars                      5.85   1.21   24.01
sortCols-method                      5.89   1.16   23.28
varPartConfInf                       4.20   0.03   24.06
dream-method                         2.39   0.09   21.90
voomWithDreamWeights                 2.36   0.11   14.96
plotCorrStructure                    1.60   0.06    7.46
as.data.frame-varPartResults-method  0.60   0.04    6.54
colinearityScore                     0.50   0.08    7.25
as.matrix-varPartResults-method      0.53   0.04    6.44
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                     user system elapsed
fitVarPartModel-method              43.81   5.83  107.43
extractVarPart                      24.31   3.60   65.48
residuals-VarParFitList-method      16.07   1.93   37.75
fitExtractVarPartModel-method       11.99   2.12   55.02
plotCompareP-method                  7.66   1.17   27.89
sortCols-method                      5.95   1.36   25.30
plotVarPart-method                   5.33   1.40   25.37
plotPercentBars                      5.33   1.14   24.03
varPartConfInf                       4.08   0.01   29.27
dream-method                         2.70   0.06   22.78
voomWithDreamWeights                 2.10   0.06   17.25
plotCorrStructure                    1.95   0.06    8.55
as.data.frame-varPartResults-method  0.79   0.03    6.81
colinearityScore                     0.54   0.10    6.89
as.matrix-varPartResults-method      0.56   0.05    6.04
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/variancePartition.Rcheck/00check.log'
for details.