############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/splatter_1.16.1.tar.gz && rm -rf splatter.buildbin-libdir && mkdir splatter.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=splatter.buildbin-libdir splatter_1.16.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL splatter_1.16.1.zip && rm splatter_1.16.1.tar.gz splatter_1.16.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1557k 100 1557k 0 0 2939k 0 --:--:-- --:--:-- --:--:-- 2945k install for i386 * installing *source* package 'splatter' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'splatter' finding HTML links ... done BASiCSEstimate html BASiCSParams html BASiCSSimulate html KersplatParams html Lun2Params html LunParams html MFAParams html Params html PhenoParams html SCDDParams html SimpleParams html SparseDCParams html SplatParams html SplatPopParams html ZINBParams html addFeatureStats html finding level-2 HTML links ... done addGeneLengths html bridge html bringItemsForward html checkDependencies html co.var html compareSCEs html diffSCEs html expandParams html getBetaStepProbs html getCounts html getLNormFactors html getParam html getParams html getPathOrder html kersplatEstBCV html kersplatEstLib html kersplatEstMean html kersplatEstimate html kersplatGenNetwork html kersplatSample html kersplatSelectRegs html kersplatSetup html kersplatSimAmbientCounts html kersplatSimCellCounts html kersplatSimCellMeans html kersplatSimCounts html kersplatSimGeneMeans html kersplatSimLibSizes html kersplatSimPaths html kersplatSimulate html listSims html logistic html lun2Estimate html lun2Simulate html lunEstimate html lunSimulate html makeCompPanel html makeDiffPanel html makeOverallPanel html mfaEstimate html mfaSimulate html minimiseSCE html mockBulkMatrix html mockBulkeQTL html mockGFF html mockVCF html newParams html phenoEstimate html phenoSimulate html rbindMatched html sampleDensity html scDDEstimate html scDDSimulate html selectFit html setParam html setParamUnchecked html setParams html setParamsUnchecked html showDFs html showPP html showValues html simpleEstimate html simpleSimulate html sparseDCEstimate html sparseDCSimulate html sparsifyMatrices html splatEstBCV html splatEstDropout html splatEstLib html splatEstMean html splatEstOutlier html splatEstimate html splatPopAssignMeans html splatPopCleanSCE html splatPopConditionEffects html splatPopConditionalEffects html splatPopDesignBatches html splatPopDesignConditions html splatPopEstimate html splatPopEstimateEffectSize html splatPopEstimateMeanCV html splatPopGroupEffects html splatPopParseGenes html splatPopParseVCF html splatPopQuantNorm html splatPopQuantNormKey html splatPopSimBatchEffects html splatPopSimConditionalEffects html splatPopSimEffects html splatPopSimGeneMeans html splatPopSimMeans html splatPopSimulate html splatPopSimulateMeans html splatPopSimulateSC html splatPopSimulateSample html splatPopeQTLEffects html splatSimBCVMeans html splatSimBatchCellMeans html splatSimBatchEffects html splatSimCellMeans html splatSimDE html splatSimDropout html splatSimGeneMeans html splatSimLibSizes html splatSimTrueCounts html splatSimulate html splatter html summariseDiff html summariseKS html summariseStats html tidyStatSumm html winsorize html zinbEstimate html zinbSimulate html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'splatter' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'splatter' as splatter_1.16.1.zip * DONE (splatter) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'splatter' successfully unpacked and MD5 sums checked