##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/sparseMatrixStats_1.4.2.tar.gz && rm -rf sparseMatrixStats.buildbin-libdir && mkdir sparseMatrixStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sparseMatrixStats.buildbin-libdir sparseMatrixStats_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL sparseMatrixStats_1.4.2.zip && rm sparseMatrixStats_1.4.2.tar.gz sparseMatrixStats_1.4.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  470k  100  470k    0     0  1564k      0 --:--:-- --:--:-- --:--:-- 1569k

install for i386

* installing *source* package 'sparseMatrixStats' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseMatrixView.cpp -o SparseMatrixView.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c methods.cpp -o methods.o
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = VectorSubsetView<14>]':
quantile.h:85:85:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]':
methods.cpp:25:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:510:73:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
     for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = VectorSubsetView<14>; R = VectorSubsetView<13>]':
methods.cpp:30:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:510:73:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = SkipNAVectorSubsetView<14>]':
methods.cpp:269:32:   required from 'double colMedians::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]'
methods.cpp:25:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colMedians; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:277:63:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c row_methods.cpp -o row_methods.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o row_methods.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/sparseMatrixStats.buildbin-libdir/00LOCK-sparseMatrixStats/00new/sparseMatrixStats/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'sparseMatrixStats'
    finding HTML links ... done
    colAlls-xgCMatrix-method                html  
    colAnyNAs-xgCMatrix-method              html  
    colAnys-xgCMatrix-method                html  
    colAvgsPerRowSet-xgCMatrix-method       html  
    colCollapse-xgCMatrix-method            html  
    colCounts-xgCMatrix-method              html  
    colCummaxs-dgCMatrix-method             html  
    colCummins-dgCMatrix-method             html  
    colCumprods-xgCMatrix-method            html  
    colCumsums-xgCMatrix-method             html  
    colDiffs-dgCMatrix-method               html  
    colIQRDiffs-dgCMatrix-method            html  
    colIQRs-xgCMatrix-method                html  
    colLogSumExps-xgCMatrix-method          html  
    colMadDiffs-dgCMatrix-method            html  
    colMads-dgCMatrix-method                html  
    colMaxs-dgCMatrix-method                html  
    colMeans2-xgCMatrix-method              html  
    colMedians-dgCMatrix-method             html  
    colMins-dgCMatrix-method                html  
    colOrderStats-dgCMatrix-method          html  
    colProds-xgCMatrix-method               html  
    colQuantiles-xgCMatrix-method           html  
    colRanges-dgCMatrix-method              html  
    colRanks-dgCMatrix-method               html  
    colSdDiffs-dgCMatrix-method             html  
    colSds-xgCMatrix-method                 html  
    colSums2-xgCMatrix-method               html  
    colTabulates-xgCMatrix-method           html  
    colVarDiffs-dgCMatrix-method            html  
    colVars-xgCMatrix-method                html  
    colWeightedMads-dgCMatrix-method        html  
    colWeightedMeans-xgCMatrix-method       html  
    colWeightedMedians-dgCMatrix-method     html  
    colWeightedSds-xgCMatrix-method         html  
    colWeightedVars-xgCMatrix-method        html  
    xgCMatrix-class                         html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'sparseMatrixStats' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c SparseMatrixView.cpp -o SparseMatrixView.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c methods.cpp -o methods.o
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = VectorSubsetView<14>]':
quantile.h:85:85:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]':
methods.cpp:25:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:510:73:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
methods.cpp: In instantiation of 'double colOrderStats::operator()(V&, R&, int) const [with V = VectorSubsetView<14>; R = VectorSubsetView<13>]':
methods.cpp:30:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colOrderStats; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:510:73:   required from here
methods.cpp:475:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
In file included from methods.cpp:6:
quantile.h: In instantiation of 'double quantile_sparse_impl(T, int, double) [with T = SkipNAVectorSubsetView<14>]':
methods.cpp:269:32:   required from 'double colMedians::operator()(V&, R&, int) const [with V = SkipNAVectorSubsetView<14>; R = SkipNAVectorSubsetView<13>]'
methods.cpp:25:18:   required from 'Rcpp::NumericVector reduce_matrix_double(Rcpp::S4, bool, Functor) [with Functor = colMedians; Rcpp::NumericVector = Rcpp::Vector<14, Rcpp::PreserveStorage>; Rcpp::S4 = Rcpp::S4_Impl<Rcpp::PreserveStorage>]'
methods.cpp:277:63:   required from here
quantile.h:35:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   for(int i = 0; i < sorted_values.size() + number_of_zeros; i++){
                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c row_methods.cpp -o row_methods.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o sparseMatrixStats.dll tmp.def RcppExports.o SparseMatrixView.o methods.o row_methods.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/sparseMatrixStats.buildbin-libdir/sparseMatrixStats/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sparseMatrixStats' as sparseMatrixStats_1.4.2.zip
* DONE (sparseMatrixStats)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'sparseMatrixStats' successfully unpacked and MD5 sums checked