############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/pcaMethods_1.84.0.tar.gz && rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=pcaMethods.buildbin-libdir pcaMethods_1.84.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL pcaMethods_1.84.0.zip && rm pcaMethods_1.84.0.tar.gz pcaMethods_1.84.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 172k 100 172k 0 0 757k 0 --:--:-- --:--:-- --:--:-- 761k install for i386 * installing *source* package 'pcaMethods' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nipals.cpp -o nipals.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/pcaMethods.buildbin-libdir/00LOCK-pcaMethods/00new/pcaMethods/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'loadings' in package 'pcaMethods' ** help *** installing help indices converting help for package 'pcaMethods' finding HTML links ... done BPCA_dostep html BPCA_initmodel html DModX-pcaRes-method html Q2 html R2VX-pcaRes-method html R2cum-pcaRes-method html RnipalsPca html asExprSet html biplot-methods html bpca html center-pcaRes-method html centered-pcaRes-method html checkData html completeObs-nniRes-method html cvseg html cvstat-pcaRes-method html deletediagonals html derrorHierarchic html dim.pcaRes html errorHierarchic html fitted-methods html forkNlpcaNet html getHierarchicIdx html helix html kEstimate html kEstimateFast html leverage-pcaRes-method html lineSearch html linr html listPcaMethods html llsImpute html loadings-ANY-method html loadings-pcaRes-method html loadings.pcaRes html metaboliteData html metaboliteDataComplete html method-pcaRes-method html nObs-pcaRes-method html nP-pcaRes-method html nPcs-pcaRes-method html nVar-pcaRes-method html nipalsPca html nlpca html nmissing-pcaRes-method html nni html nniRes html optiAlgCgd html orth html pca html pcaMethods-deprecated html pcaMethods html pcaNet html pcaRes html plot.pcaRes html plotPcs html ppca html predict-methods html prep html rediduals-methods html repmat html robustPca html robustSvd html sDev-pcaRes-method html scaled-pcaRes-method html scl-pcaRes-method html scores-pcaRes-method html scores.pcaRes html show-methods html showNniRes html simpleEllipse html slplot-pcaRes-method html sortFeatures html summary html svdImpute html svdPca html tempFixNas html vector2matrices-matrix-method html vector2matrices-nlpcaNet-method html wasna-pcaRes-method html weightsAccount html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'pcaMethods' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nipals.cpp -o nipals.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o pcaMethods.dll tmp.def RcppExports.o nipals.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'pcaMethods' as pcaMethods_1.84.0.zip * DONE (pcaMethods) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'pcaMethods' successfully unpacked and MD5 sums checked