############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:mistyR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings mistyR_1.0.3.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/mistyR.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'mistyR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'mistyR' version '1.0.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'mistyR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plot_interaction_heatmap: no visible binding for global variable 'Importance' plot_interaction_heatmap: no visible binding for global variable 'Predictor' plot_interaction_heatmap: no visible binding for global variable 'total' plot_interaction_heatmap: no visible binding for global variable 'Target' plot_view_contributions: no visible binding for global variable 'measure' plot_view_contributions: no visible binding for global variable 'target' Undefined global functions or variables: Importance Predictor Target measure target total * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed collect_results 175.41 2.03 176.92 reexports 60.13 0.54 60.53 run_misty 58.17 0.32 58.28 remove_views 28.64 0.10 28.75 add_paraview 21.00 0.13 21.13 plot_improvement_stats 8.81 0.80 8.90 create_view 7.45 0.02 7.47 add_juxtaview 6.08 0.15 6.48 plot_contrast_results 5.13 0.70 5.25 plot_contrast_heatmap 4.76 0.42 4.85 plot_interaction_heatmap 4.56 0.50 4.64 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed collect_results 163.19 2.05 164.81 reexports 59.34 0.57 59.85 run_misty 53.44 0.37 53.75 remove_views 37.58 0.10 37.67 add_paraview 22.33 0.09 22.42 create_view 11.74 0.00 11.74 plot_improvement_stats 8.66 0.74 8.74 add_juxtaview 6.28 0.13 6.40 plot_contrast_results 5.03 0.26 5.09 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/mistyR.Rcheck/00check.log' for details.