##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/infercnv_1.8.1.tar.gz && rm -rf infercnv.buildbin-libdir && mkdir infercnv.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=infercnv.buildbin-libdir infercnv_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL infercnv_1.8.1.zip && rm infercnv_1.8.1.tar.gz infercnv_1.8.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 11 3766k   11  421k    0     0   602k      0  0:00:06 --:--:--  0:00:06  602k
 55 3766k   55 2092k    0     0  1260k      0  0:00:02  0:00:01  0:00:01 1260k
100 3766k  100 3766k    0     0  1617k      0  0:00:02  0:00:02 --:--:-- 1617k

install for i386

* installing *source* package 'infercnv' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'infercnv'
    finding HTML links ... done
    CreateInfercnvObject                    html  
    HMM_states                              html  
    MCMC_inferCNV-class                     html  
    add_to_seurat                           html  
    apply_median_filtering                  html  
    color.palette                           html  
    filterHighPNormals                      html  
    inferCNVBayesNet                        html  
    infercnv-class                          html  
    infercnv-package                        html  
    infercnv_annots_example                 html  
    infercnv_data_example                   html  
    infercnv_genes_example                  html  
    infercnv_object_example                 html  
    mcmc_obj                                html  
    plot_cnv                                html  
    plot_per_group                          html  
    run                                     html  
    sample_object                           html  
    validate_infercnv_obj                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'infercnv' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'infercnv' as infercnv_1.8.1.zip
* DONE (infercnv)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'infercnv' successfully unpacked and MD5 sums checked