############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data imageHTS ### ############################################################################## ############################################################################## * checking for file ‘imageHTS/DESCRIPTION’ ... OK * preparing ‘imageHTS’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘imageHTS-introduction.Rnw’ using Sweave Loading required package: EBImage Attaching package: ‘EBImage’ The following object is masked _by_ ‘.GlobalEnv’: display Loading required package: cellHTS2 Loading required package: RColorBrewer Loading required package: Biobase Loading required package: BiocGenerics Loading required package: parallel Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:parallel’: clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Attaching package: ‘Biobase’ The following object is masked from ‘package:EBImage’: channel Loading required package: genefilter Loading required package: splots Loading required package: vsn Loading required package: hwriter Loading required package: locfit locfit 1.5-9.4 2020-03-24 Loading required package: grid trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/imageconf.txt' Content type 'text/plain; charset=UTF-8' length 374 bytes ================================================== downloaded 374 bytes trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/description.txt' Warning in fileHTS(object, type = "file", filename = descripFile, access = access) : cannot download the file pointed by "http://www.huber.embl.de/cellmorph/kimorph//conf/description.txt" to the location "/tmp/Rtmp9M5PjR/kimorph/conf/description.txt" trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/plateconf.txt' Content type 'text/plain; charset=UTF-8' length 415 bytes ================================================== downloaded 415 bytes trying URL 'http://www.huber.embl.de/cellmorph/kimorph//conf/screenlog.txt' Content type 'text/plain; charset=UTF-8' length 110 bytes ================================================== downloaded 110 bytes Error: processing vignette 'imageHTS-introduction.Rnw' failed with diagnostics: chunk 28 (label = init) Error in (function (filename, path, ...) : The file 'description.txt' could not be found in the given path '/tmp/Rtmp9M5PjR/kimorph/conf'. --- failed re-building ‘imageHTS-introduction.Rnw’ SUMMARY: processing the following file failed: ‘imageHTS-introduction.Rnw’ Error: Vignette re-building failed. Execution halted