############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/hipathia_2.8.0.tar.gz && rm -rf hipathia.buildbin-libdir && mkdir hipathia.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hipathia.buildbin-libdir hipathia_2.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL hipathia_2.8.0.zip && rm hipathia_2.8.0.tar.gz hipathia_2.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 60 5163k 60 3144k 0 0 3193k 0 0:00:01 --:--:-- 0:00:01 3192k 100 5163k 100 5163k 0 0 3656k 0 0:00:01 0:00:01 --:--:-- 3659k install for i386 * installing *source* package 'hipathia' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'hipathia' finding HTML links ... done annotate_paths html brca html brca_data html brca_design html comp html create_report html do_pca html do_wilcoxon html exp_data html get_go_names html get_highest_sig_ancestor html get_node_names html get_nodes_data html get_path_names html get_paths_data html get_pathway_functions html get_pathways_annotations html get_pathways_list html get_pathways_summary html go_vals html heatmap_plot html hhead html hipathia html igraphs_upgrade html is_accepted_species html load_annofuns html load_annots html load_entrez_hgnc html load_gobp_frame html load_gobp_net html load_mgi html load_pathways html load_pseudo_mgi html load_xref html mgi_from_sif html multiple_pca_plot html node_color html node_color_per_de html normalize_data html normalize_paths html path_vals html paths_to_go_ancestor html pathway_comparison_plot html pca_plot html quantify_terms html results html save_results html top_pathways html translate_data html translate_matrix html visualize_report html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'hipathia' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'hipathia' as hipathia_2.8.0.zip * DONE (hipathia) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'hipathia' successfully unpacked and MD5 sums checked