############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf dexus.buildbin-libdir && mkdir dexus.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dexus.buildbin-libdir dexus_1.32.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'dexus' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dexus.cpp -o dexus.o dexus.cpp: In function 'SEXPREC* dexus_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)': dexus.cpp:193:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable] const double DEFAULT_R = 20; // R value used when re-setting clusters ^~~~~~~~~ dexus.cpp: In function 'SEXPREC* dexss_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)': dexus.cpp:575:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable] const double DEFAULT_R = 20; // R value used when re-setting clusters ^~~~~~~~~ C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o dexus.dll tmp.def dexus.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/dexus.buildbin-libdir/00LOCK-dexus/00new/dexus/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'dexus' finding HTML links ... done DEXUSResult-class html DEXUSResult-subset html INI html INIThreshold-set html accessors html countsBottomly html countsGilad html countsLi html countsMontgomery html countsPickrell html dexss html dexus html dexus.parallel html getSizeNB html normalizeData html plot html sort html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Package 'dexus' is deprecated and will be removed from Bioconductor version 3.14 ** testing if installed package can be loaded from final location Warning: Package 'dexus' is deprecated and will be removed from Bioconductor version 3.14 ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'dexus' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dexus.cpp -o dexus.o dexus.cpp: In function 'SEXPREC* dexus_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)': dexus.cpp:193:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable] const double DEFAULT_R = 20; // R value used when re-setting clusters ^~~~~~~~~ dexus.cpp: In function 'SEXPREC* dexss_impl(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, int*, SEXP, SEXP, SEXP)': dexus.cpp:575:15: warning: unused variable 'DEFAULT_R' [-Wunused-variable] const double DEFAULT_R = 20; // R value used when re-setting clusters ^~~~~~~~~ C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o dexus.dll tmp.def dexus.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/dexus.buildbin-libdir/dexus/libs/x64 ** testing if installed package can be loaded Warning: Package 'dexus' is deprecated and will be removed from Bioconductor version 3.14 * MD5 sums packaged installation of 'dexus' as dexus_1.32.0.zip * DONE (dexus)