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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/beadarraySNP_1.58.0.tar.gz && rm -rf beadarraySNP.buildbin-libdir && mkdir beadarraySNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=beadarraySNP.buildbin-libdir beadarraySNP_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL beadarraySNP_1.58.0.zip && rm beadarraySNP_1.58.0.tar.gz beadarraySNP_1.58.0.zip
###
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install for i386

* installing *source* package 'beadarraySNP' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'beadarraySNP'
    finding HTML links ... done
    BeadstudioQC                            html  
    CopynumberConversion                    html  
    Datasets                                html  
    GenomicReports                          html  
    GetBeadStudioSampleNames                html  
    PolarTransforms                         html  
    QCIllumina-class                        html  
    Sample_Map2Samplesheet                  html  
    SnpSetSegments-class                    html  
    finding level-2 HTML links ... done

    alterCN                                 html  
    arrayType                               html  
    backgroundCorrect.SNP                   html  
    backgroundEstimate                      html  
    calculateLOH                            html  
    calculateQCarray                        html  
    class.SnpSetIllumina                    html  
    compareGenotypes                        html  
    createCNSummary                         html  
    dist.GT                                 html  
    getDNAindex                             html  
    heterozygosity                          html  
    heterozygousSNPs                        html  
    interactiveCNselect                     html  
    normalizeBetweenAlleles.SNP             html  
    normalizeBetweenSubsamples.SNP          html  
    normalizeLoci.SNP                       html  
    normalizeWithinArrays.SNP               html  
    pdfChromosomesSmoothCopyNumber          html  
    pdfQC                                   html  
    plotGoldenGate4OPA                      html  
    plotQC                                  html  
    read.SnpSetIllumina                     html  
    removeLowQualityProbes                  html  
    removeLowQualitySamples                 html  
    renameOPA                               html  
    reportGenotypeSegmentation              html  
    reportSamplePanelQC-methods             html  
    segmentate                              html  
    setRealCN                               html  
    smoothed.intensity                      html  
    standardNormalization                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'beadarraySNP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'beadarraySNP' as beadarraySNP_1.58.0.zip
* DONE (beadarraySNP)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'beadarraySNP' successfully unpacked and MD5 sums checked