############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/basecallQC_1.16.0.tar.gz && rm -rf basecallQC.buildbin-libdir && mkdir basecallQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=basecallQC.buildbin-libdir basecallQC_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL basecallQC_1.16.0.zip && rm basecallQC_1.16.0.tar.gz basecallQC_1.16.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 663k 100 663k 0 0 1751k 0 --:--:-- --:--:-- --:--:-- 1754k install for i386 * installing *source* package 'basecallQC' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'basecallQC' finding HTML links ... done BCL2FastQparams html baseCallMetrics html basecallQC html createBCLcommand html createBasemasks html demultiplexMetrics html demuxBarplot html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/basecallQC.buildbin-libdir/00LOCK-basecallQC/00new/basecallQC/help/demuxBarplot+2CbasecallQC-method.html demuxBoxplot html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/basecallQC.buildbin-libdir/00LOCK-basecallQC/00new/basecallQC/help/demuxBoxplot+2CbasecallQC-method.html indexlengths html interOpsReport html makeFQTable html passFilterBar html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/basecallQC.buildbin-libdir/00LOCK-basecallQC/00new/basecallQC/help/passFilterBar+2CbasecallQC-method.html passFilterBoxplot html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/basecallQC.buildbin-libdir/00LOCK-basecallQC/00new/basecallQC/help/passFilterBoxplot+2CbasecallQC-method.html passFilterTileplot html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/basecallQC.buildbin-libdir/00LOCK-basecallQC/00new/basecallQC/help/passFilterTilePlot+2CbasecallQC-method.html readlengths html reportBCL html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/basecallQC.buildbin-libdir/00LOCK-basecallQC/00new/basecallQC/help/reportBCL+2CbasecallQC-method.html summaryConvStatsTable html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/basecallQC.buildbin-libdir/00LOCK-basecallQC/00new/basecallQC/help/summaryConvStatsTable+2CbasecallQC-method.html summaryDemuxTable html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/basecallQC.buildbin-libdir/00LOCK-basecallQC/00new/basecallQC/help/summaryDemuxTable+2CbasecallQC-method.html validateBCLSheet html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'basecallQC' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'basecallQC' as basecallQC_1.16.0.zip * DONE (basecallQC) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'basecallQC' successfully unpacked and MD5 sums checked